Hb_007477_090

Information

Type -
Description -
Location Contig7477: 77018-80003
Sequence    

Annotation

kegg
ID tcc:TCM_003762
description Tetraspanin family protein, putative
nr
ID XP_012085178.1
description PREDICTED: tetraspanin-18 [Jatropha curcas]
swissprot
ID Q93XY5
description Tetraspanin-18 OS=Arabidopsis thaliana GN=TOM2AH2 PE=2 SV=1
trembl
ID A0A067JUE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17591 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_090 0.0 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
2 Hb_151930_020 0.132200597 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
3 Hb_000777_060 0.1494923511 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004055_060 0.1613828896 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
5 Hb_001279_250 0.1637156778 - - PREDICTED: pectate lyase-like [Jatropha curcas]
6 Hb_010362_020 0.1701535948 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
7 Hb_000853_360 0.1762313605 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
8 Hb_001198_030 0.1800739288 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
9 Hb_008557_020 0.1806130125 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
10 Hb_006132_050 0.1875783638 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
11 Hb_000723_310 0.1880912121 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001221_380 0.1920977406 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
13 Hb_001252_140 0.1936833799 - - catalytic, putative [Ricinus communis]
14 Hb_001621_180 0.1938375931 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
15 Hb_003023_050 0.1948043111 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
16 Hb_007441_180 0.194897453 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001616_020 0.195813654 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
18 Hb_004680_020 0.1966913425 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
19 Hb_000025_290 0.1987581146 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
20 Hb_002293_030 0.1987784677 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]

Gene co-expression network

sample Hb_007477_090 Hb_007477_090 Hb_151930_020 Hb_151930_020 Hb_007477_090--Hb_151930_020 Hb_000777_060 Hb_000777_060 Hb_007477_090--Hb_000777_060 Hb_004055_060 Hb_004055_060 Hb_007477_090--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_007477_090--Hb_001279_250 Hb_010362_020 Hb_010362_020 Hb_007477_090--Hb_010362_020 Hb_000853_360 Hb_000853_360 Hb_007477_090--Hb_000853_360 Hb_001616_020 Hb_001616_020 Hb_151930_020--Hb_001616_020 Hb_007441_180 Hb_007441_180 Hb_151930_020--Hb_007441_180 Hb_001821_120 Hb_001821_120 Hb_151930_020--Hb_001821_120 Hb_000580_160 Hb_000580_160 Hb_151930_020--Hb_000580_160 Hb_011310_060 Hb_011310_060 Hb_151930_020--Hb_011310_060 Hb_000061_160 Hb_000061_160 Hb_000777_060--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_000777_060--Hb_001621_180 Hb_000330_170 Hb_000330_170 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_004055_060--Hb_001279_250 Hb_000052_010 Hb_000052_010 Hb_004055_060--Hb_000052_010 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_001279_250--Hb_003023_050 Hb_008557_020 Hb_008557_020 Hb_001279_250--Hb_008557_020 Hb_001279_250--Hb_000052_010 Hb_001279_250--Hb_000580_160 Hb_000184_180 Hb_000184_180 Hb_001279_250--Hb_000184_180 Hb_000025_290 Hb_000025_290 Hb_010362_020--Hb_000025_290 Hb_001198_030 Hb_001198_030 Hb_010362_020--Hb_001198_030 Hb_001104_120 Hb_001104_120 Hb_010362_020--Hb_001104_120 Hb_000326_010 Hb_000326_010 Hb_010362_020--Hb_000326_010 Hb_002293_030 Hb_002293_030 Hb_010362_020--Hb_002293_030 Hb_005276_100 Hb_005276_100 Hb_010362_020--Hb_005276_100 Hb_006132_050 Hb_006132_050 Hb_000853_360--Hb_006132_050 Hb_000853_360--Hb_005276_100 Hb_002326_180 Hb_002326_180 Hb_000853_360--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_000853_360--Hb_000617_050 Hb_000853_360--Hb_001616_020 Hb_000106_090 Hb_000106_090 Hb_000853_360--Hb_000106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07509 0.220903 0.031843 0.320063 9.22847 4.69682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5286 23.3613 3.04583 1.08659 0

CAGE analysis