Hb_007479_020

Information

Type -
Description -
Location Contig7479: 26889-35302
Sequence    

Annotation

kegg
ID tcc:TCM_001115
description Nucleotide-sugar transporter family protein
nr
ID XP_012090516.1
description PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
swissprot
ID Q8LES0
description CMP-sialic acid transporter 5 OS=Arabidopsis thaliana GN=At5g65000 PE=2 SV=1
trembl
ID A0A067LPM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24044 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56725: 29007-35299
cDNA
(Sanger)
(ID:Location)		 039_I09.ab1: 26701-27405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_020 0.0 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
2 Hb_001722_100 0.0627529003 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000671_090 0.063128248 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
4 Hb_001383_060 0.0655249944 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_001433_050 0.0657469546 - - 60S ribosomal protein L18, putative [Ricinus communis]
6 Hb_000120_750 0.0660785733 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
7 Hb_008173_090 0.0683814958 - - glutathione peroxidase, putative [Ricinus communis]
8 Hb_004837_140 0.0698959827 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
9 Hb_000574_480 0.0716565154 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
10 Hb_003125_150 0.0727081281 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
11 Hb_003376_030 0.072840845 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
12 Hb_010172_070 0.0729921011 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_001912_010 0.0734223192 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
14 Hb_007741_050 0.074010676 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_003927_130 0.0741276291 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
16 Hb_001257_080 0.0759429 - - conserved hypothetical protein [Ricinus communis]
17 Hb_148200_010 0.0764707465 - - hypothetical protein 33 [Hevea brasiliensis]
18 Hb_002918_200 0.0765873963 - - -
19 Hb_002963_010 0.0775315511 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
20 Hb_089140_100 0.0785196926 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_007479_020 Hb_007479_020 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_001722_100--Hb_008173_090 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000979_230 Hb_000979_230 Hb_000671_090--Hb_000979_230 Hb_000270_370 Hb_000270_370 Hb_000671_090--Hb_000270_370 Hb_000671_090--Hb_000834_270 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_001383_060--Hb_000120_750 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_001433_050--Hb_003927_130 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.7959 23.0057 31.8392 43.3874 59.5196 70.0464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.523 158.157 105.653 46.3535 16.3105

CAGE analysis