Hb_007479_040

Information

Type -
Description -
Location Contig7479: 38972-43448
Sequence    

Annotation

kegg
ID rcu:RCOM_0212730
description hypothetical protein
nr
ID XP_002531255.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A8KBE0
description Oxidation resistance protein 1 OS=Xenopus tropicalis GN=oxr1 PE=2 SV=2
trembl
ID B9SZ36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0212730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56726: 39012-43345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002110_190 0.0456443817 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
3 Hb_000028_480 0.0525787049 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
4 Hb_002044_150 0.0554776411 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
5 Hb_004567_090 0.0567426026 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
6 Hb_002518_260 0.0586950133 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
7 Hb_004254_090 0.0595345936 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
8 Hb_000035_180 0.0595573496 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
9 Hb_011037_030 0.0605669783 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
10 Hb_156279_020 0.0608548446 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
11 Hb_054865_150 0.0616940238 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
12 Hb_000028_180 0.0621682859 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
13 Hb_000138_100 0.0633126838 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
14 Hb_000665_100 0.0641163382 - - PREDICTED: neurochondrin [Jatropha curcas]
15 Hb_026198_070 0.0644578722 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
16 Hb_011386_010 0.064628926 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_002078_350 0.0659430142 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
18 Hb_005054_110 0.0667027256 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
19 Hb_002496_010 0.06690172 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
20 Hb_000156_010 0.0683223435 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007479_040 Hb_007479_040 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000028_480--Hb_002518_260 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_002044_150--Hb_004254_090 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_004567_090--Hb_054865_150 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000792_010 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_004254_090--Hb_002518_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3951 26.0656 27.0353 32.6399 30.9597 40.2174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7624 32.5222 41.1228 39.1265 34.3072

CAGE analysis