Hb_007479_050

Information

Type -
Description -
Location Contig7479: 45062-48276
Sequence    

Annotation

kegg
ID rcu:RCOM_0212610
description hypothetical protein
nr
ID XP_012091472.1
description PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
swissprot
ID Q9SIE0
description Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Arabidopsis thaliana GN=ALKBH2 PE=2 SV=2
trembl
ID A0A067LEN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24051 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56728: 45187-48250 , PASA_asmbl_56729: 46522-46898 , PASA_asmbl_56730: 49260-50054
cDNA
(Sanger)
(ID:Location)		 006_N12.ab1: 49260-50054

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_050 0.0 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
2 Hb_011316_100 0.1088630848 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
3 Hb_004705_040 0.1179619674 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
4 Hb_000554_010 0.1196569862 - - transporter, putative [Ricinus communis]
5 Hb_000307_140 0.1219012621 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
6 Hb_002518_030 0.1222219855 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 3 isoform X1 [Populus euphratica]
7 Hb_000170_200 0.1278034206 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
8 Hb_001699_040 0.1300159161 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_001053_180 0.1309158452 - - protein binding protein, putative [Ricinus communis]
10 Hb_004007_160 0.1312741162 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
11 Hb_002835_240 0.1318873634 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
12 Hb_008847_040 0.1320758575 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001348_180 0.1329390964 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
14 Hb_000096_090 0.1332636373 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
15 Hb_013726_020 0.1333234801 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_000299_040 0.1356882938 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
17 Hb_002374_570 0.1359798101 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_000347_540 0.136469783 - - protein binding protein, putative [Ricinus communis]
19 Hb_121937_010 0.1370243772 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
20 Hb_001811_140 0.1383924884 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]

Gene co-expression network

sample Hb_007479_050 Hb_007479_050 Hb_011316_100 Hb_011316_100 Hb_007479_050--Hb_011316_100 Hb_004705_040 Hb_004705_040 Hb_007479_050--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_007479_050--Hb_000554_010 Hb_000307_140 Hb_000307_140 Hb_007479_050--Hb_000307_140 Hb_002518_030 Hb_002518_030 Hb_007479_050--Hb_002518_030 Hb_000170_200 Hb_000170_200 Hb_007479_050--Hb_000170_200 Hb_000072_070 Hb_000072_070 Hb_011316_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_002183_070 Hb_002183_070 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_004007_160 Hb_004007_160 Hb_004705_040--Hb_004007_160 Hb_004705_040--Hb_000554_010 Hb_000299_040 Hb_000299_040 Hb_004705_040--Hb_000299_040 Hb_000956_130 Hb_000956_130 Hb_004705_040--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004705_040--Hb_000649_050 Hb_000554_010--Hb_004007_160 Hb_004375_130 Hb_004375_130 Hb_000554_010--Hb_004375_130 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_000554_010--Hb_000649_050 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_005725_080 Hb_005725_080 Hb_000307_140--Hb_005725_080 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000442_150 Hb_000442_150 Hb_000307_140--Hb_000442_150 Hb_002518_030--Hb_000170_200 Hb_000975_190 Hb_000975_190 Hb_002518_030--Hb_000975_190 Hb_001699_040 Hb_001699_040 Hb_002518_030--Hb_001699_040 Hb_000521_160 Hb_000521_160 Hb_002518_030--Hb_000521_160 Hb_000453_160 Hb_000453_160 Hb_002518_030--Hb_000453_160 Hb_013726_020 Hb_013726_020 Hb_002518_030--Hb_013726_020 Hb_011671_040 Hb_011671_040 Hb_000170_200--Hb_011671_040 Hb_000110_310 Hb_000110_310 Hb_000170_200--Hb_000110_310 Hb_008748_040 Hb_008748_040 Hb_000170_200--Hb_008748_040 Hb_003688_130 Hb_003688_130 Hb_000170_200--Hb_003688_130 Hb_000579_120 Hb_000579_120 Hb_000170_200--Hb_000579_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.9902 7.32446 42.1562 55.514 42.7312 46.2268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.0113 45.4754 41.1401 8.86463 26.0869

CAGE analysis