Hb_007479_080

Information

Type -
Description -
Location Contig7479: 87356-92827
Sequence    

Annotation

kegg
ID pmum:103332799
description uncharacterized LOC103332799
nr
ID XP_012091974.1
description PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
swissprot
ID Q3ZBR5
description Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1
trembl
ID A0A067LHL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24057 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arm-repeat tetratricopeptide repeat -like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56736: 87319-88549 , PASA_asmbl_56737: 88560-92874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_080 0.0 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
2 Hb_012787_060 0.1006328047 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
3 Hb_000342_020 0.1070631001 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_001269_400 0.1089696014 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
5 Hb_002151_020 0.1090936113 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
6 Hb_003411_020 0.1091862265 - - alpha-glucosidase, putative [Ricinus communis]
7 Hb_001048_070 0.1147707061 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
8 Hb_004421_010 0.115166097 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_000162_070 0.1173338004 - - phospholipase C, putative [Ricinus communis]
10 Hb_001677_090 0.1183912104 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
11 Hb_002902_040 0.1184704841 - - PREDICTED: peroxidase 51 [Jatropha curcas]
12 Hb_007237_080 0.1186795776 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000645_160 0.1187438348 - - protein translocase, putative [Ricinus communis]
14 Hb_000120_320 0.1201784502 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000613_250 0.1204179717 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
16 Hb_002811_110 0.123586293 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_000098_260 0.1250452818 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_002641_140 0.1262447281 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_001141_160 0.1264338777 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_032920_030 0.1266413224 - - signal transducer, putative [Ricinus communis]

Gene co-expression network

sample Hb_007479_080 Hb_007479_080 Hb_012787_060 Hb_012787_060 Hb_007479_080--Hb_012787_060 Hb_000342_020 Hb_000342_020 Hb_007479_080--Hb_000342_020 Hb_001269_400 Hb_001269_400 Hb_007479_080--Hb_001269_400 Hb_002151_020 Hb_002151_020 Hb_007479_080--Hb_002151_020 Hb_003411_020 Hb_003411_020 Hb_007479_080--Hb_003411_020 Hb_001048_070 Hb_001048_070 Hb_007479_080--Hb_001048_070 Hb_012787_060--Hb_001048_070 Hb_002888_100 Hb_002888_100 Hb_012787_060--Hb_002888_100 Hb_002641_140 Hb_002641_140 Hb_012787_060--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_012787_060--Hb_000098_260 Hb_004634_030 Hb_004634_030 Hb_012787_060--Hb_004634_030 Hb_000613_250 Hb_000613_250 Hb_000342_020--Hb_000613_250 Hb_000472_020 Hb_000472_020 Hb_000342_020--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_000342_020--Hb_002902_040 Hb_144703_010 Hb_144703_010 Hb_000342_020--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000342_020--Hb_019496_040 Hb_000342_020--Hb_002151_020 Hb_149055_010 Hb_149055_010 Hb_001269_400--Hb_149055_010 Hb_001269_400--Hb_002151_020 Hb_001269_400--Hb_002902_040 Hb_000473_100 Hb_000473_100 Hb_001269_400--Hb_000473_100 Hb_007237_080 Hb_007237_080 Hb_001269_400--Hb_007237_080 Hb_001269_400--Hb_000342_020 Hb_002151_020--Hb_002902_040 Hb_008598_010 Hb_008598_010 Hb_002151_020--Hb_008598_010 Hb_002151_020--Hb_019496_040 Hb_000045_080 Hb_000045_080 Hb_002151_020--Hb_000045_080 Hb_002151_020--Hb_000473_100 Hb_004079_100 Hb_004079_100 Hb_003411_020--Hb_004079_100 Hb_008566_080 Hb_008566_080 Hb_003411_020--Hb_008566_080 Hb_002999_080 Hb_002999_080 Hb_003411_020--Hb_002999_080 Hb_001677_090 Hb_001677_090 Hb_003411_020--Hb_001677_090 Hb_000398_140 Hb_000398_140 Hb_003411_020--Hb_000398_140 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_001048_070--Hb_002888_100 Hb_001048_070--Hb_002641_140 Hb_001048_070--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0760247 8.53459 7.80392 17.2603 0.0441567 0.0512736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.64599 0 7.13299 7.40138

CAGE analysis