Hb_007481_010

Information

Type -
Description -
Location Contig7481: 9497-19916
Sequence    

Annotation

kegg
ID rcu:RCOM_1203670
description hypothetical protein
nr
ID XP_012065234.1
description PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
swissprot
ID O59737
description GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1
trembl
ID A0A067L669
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20922 PE=4 SV=1
Gene Ontology
ID GO:0009733
description tbc1 domain family member 22b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56754: 9635-19912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007481_010 0.0 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
2 Hb_003528_030 0.048814254 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
3 Hb_000352_300 0.0514942593 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_001269_330 0.0566595773 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
5 Hb_000256_150 0.0576421853 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
6 Hb_000477_100 0.0577655165 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
7 Hb_000046_500 0.0611383221 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
8 Hb_003683_020 0.0628623438 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_005797_010 0.0631102939 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
10 Hb_002728_080 0.0642735019 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_012498_010 0.0682611935 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
12 Hb_000140_290 0.0694741634 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
13 Hb_009569_040 0.0718475841 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
14 Hb_004990_010 0.0749184617 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
15 Hb_004102_170 0.0750339817 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
16 Hb_004705_170 0.0759520787 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
17 Hb_008970_030 0.0760524543 - - arf gtpase-activating protein, putative [Ricinus communis]
18 Hb_000146_040 0.0774826314 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
19 Hb_002989_020 0.0780816533 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
20 Hb_000049_020 0.0793137994 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007481_010 Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000352_300--Hb_000477_100 Hb_000352_300--Hb_000046_500 Hb_000352_300--Hb_003683_020 Hb_001269_330--Hb_000256_150 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_019181_040 Hb_019181_040 Hb_001269_330--Hb_019181_040 Hb_001269_330--Hb_012498_010 Hb_001269_330--Hb_000046_500 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000300_270 Hb_000300_270 Hb_000256_150--Hb_000300_270 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_000477_100--Hb_000046_500 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_000046_500--Hb_019181_040 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50448 3.87768 5.83435 10.9728 5.04365 5.35672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93973 4.82735 5.31757 7.11017 5.70117

CAGE analysis