Hb_007481_020

Information

Type -
Description -
Location Contig7481: 29444-45333
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56756: 44752-44894
cDNA
(Sanger)
(ID:Location)		 046_N17r.ab1: 44442-45198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007481_020 0.0 - - -
2 Hb_000021_120 0.1862777516 - - PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
3 Hb_001951_030 0.2139551438 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
4 Hb_000097_040 0.222613074 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
5 Hb_007144_010 0.2275890027 - - -
6 Hb_000438_040 0.2280325156 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_005157_010 0.2396367378 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_007773_030 0.2416433516 - - -
9 Hb_089920_010 0.2446917357 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_133636_010 0.2462744534 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
11 Hb_141142_010 0.2516174573 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
12 Hb_004976_060 0.2523629625 - - -
13 Hb_001673_110 0.2594910396 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
14 Hb_001545_220 0.2603901238 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
15 Hb_002553_160 0.2653284914 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
16 Hb_008225_100 0.2696797551 - - -
17 Hb_002760_030 0.2724251788 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
18 Hb_004044_060 0.2736691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001338_050 0.2737781967 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
20 Hb_000035_300 0.2765495992 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007481_020 Hb_007481_020 Hb_000021_120 Hb_000021_120 Hb_007481_020--Hb_000021_120 Hb_001951_030 Hb_001951_030 Hb_007481_020--Hb_001951_030 Hb_000097_040 Hb_000097_040 Hb_007481_020--Hb_000097_040 Hb_007144_010 Hb_007144_010 Hb_007481_020--Hb_007144_010 Hb_000438_040 Hb_000438_040 Hb_007481_020--Hb_000438_040 Hb_005157_010 Hb_005157_010 Hb_007481_020--Hb_005157_010 Hb_012702_020 Hb_012702_020 Hb_000021_120--Hb_012702_020 Hb_003752_130 Hb_003752_130 Hb_000021_120--Hb_003752_130 Hb_015912_010 Hb_015912_010 Hb_000021_120--Hb_015912_010 Hb_000101_060 Hb_000101_060 Hb_000021_120--Hb_000101_060 Hb_000021_120--Hb_000438_040 Hb_001951_030--Hb_005157_010 Hb_007416_150 Hb_007416_150 Hb_001951_030--Hb_007416_150 Hb_000670_110 Hb_000670_110 Hb_001951_030--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_001951_030--Hb_011618_040 Hb_089920_010 Hb_089920_010 Hb_001951_030--Hb_089920_010 Hb_008225_100 Hb_008225_100 Hb_001951_030--Hb_008225_100 Hb_002903_130 Hb_002903_130 Hb_000097_040--Hb_002903_130 Hb_000977_010 Hb_000977_010 Hb_000097_040--Hb_000977_010 Hb_000097_040--Hb_011618_040 Hb_000556_110 Hb_000556_110 Hb_000097_040--Hb_000556_110 Hb_003640_030 Hb_003640_030 Hb_000097_040--Hb_003640_030 Hb_001946_150 Hb_001946_150 Hb_000097_040--Hb_001946_150 Hb_001269_040 Hb_001269_040 Hb_007144_010--Hb_001269_040 Hb_007144_010--Hb_005157_010 Hb_025194_010 Hb_025194_010 Hb_007144_010--Hb_025194_010 Hb_003175_020 Hb_003175_020 Hb_007144_010--Hb_003175_020 Hb_002760_030 Hb_002760_030 Hb_007144_010--Hb_002760_030 Hb_133636_010 Hb_133636_010 Hb_007144_010--Hb_133636_010 Hb_000184_080 Hb_000184_080 Hb_000438_040--Hb_000184_080 Hb_047923_020 Hb_047923_020 Hb_000438_040--Hb_047923_020 Hb_000111_220 Hb_000111_220 Hb_000438_040--Hb_000111_220 Hb_004044_060 Hb_004044_060 Hb_000438_040--Hb_004044_060 Hb_003299_010 Hb_003299_010 Hb_005157_010--Hb_003299_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_005157_010--Hb_133636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0188689 0.178637 0.0238428 0 0.0293962 0.0133058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.130441 0

CAGE analysis