Hb_007481_030

Information

Type -
Description -
Location Contig7481: 44187-45219
Sequence    

Annotation

kegg
ID tcc:TCM_019939
description hypothetical protein
nr
ID XP_012065237.1
description PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EID1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_019939 PE=4 SV=1
Gene Ontology
ID GO:0006914
description PREDICTED: uncharacterized protein LOC105628433

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56755: 44182-45249
cDNA
(Sanger)
(ID:Location)		 002_F12.ab1: 44182-45089 , 046_N17.ab1: 44182-45046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007481_030 0.0 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
2 Hb_002370_040 0.1260500772 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
3 Hb_143960_010 0.1329903023 - - -
4 Hb_007223_010 0.1420101489 - - conserved hypothetical protein [Ricinus communis]
5 Hb_167381_020 0.1482385371 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_000120_520 0.1574961759 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
7 Hb_002997_160 0.1599552859 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
8 Hb_000175_350 0.1618190791 - - phopholipase d alpha, putative [Ricinus communis]
9 Hb_001369_770 0.1621729698 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_003895_030 0.1658578314 - - -
11 Hb_000152_640 0.1672868361 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
12 Hb_000422_110 0.1679980797 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
13 Hb_000345_490 0.1687971097 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
14 Hb_010346_020 0.1690332785 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
15 Hb_000181_360 0.1699238843 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
16 Hb_002742_080 0.170979104 - - unknown [Populus trichocarpa]
17 Hb_012395_080 0.1720440284 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
18 Hb_005260_040 0.1737963894 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
19 Hb_000497_010 0.1740171676 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
20 Hb_000024_120 0.174286162 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007481_030 Hb_007481_030 Hb_002370_040 Hb_002370_040 Hb_007481_030--Hb_002370_040 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_007223_010 Hb_007223_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_002370_040--Hb_007223_010 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_005260_040 Hb_005260_040 Hb_143960_010--Hb_005260_040 Hb_002375_110 Hb_002375_110 Hb_143960_010--Hb_002375_110 Hb_054885_020 Hb_054885_020 Hb_143960_010--Hb_054885_020 Hb_000106_020 Hb_000106_020 Hb_143960_010--Hb_000106_020 Hb_143960_010--Hb_000120_520 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_000116_510 Hb_000116_510 Hb_167381_020--Hb_000116_510 Hb_000120_420 Hb_000120_420 Hb_167381_020--Hb_000120_420 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_167381_020--Hb_000336_110 Hb_011909_060 Hb_011909_060 Hb_167381_020--Hb_011909_060 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000152_640 Hb_000152_640 Hb_000120_520--Hb_000152_640 Hb_000700_060 Hb_000700_060 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7707 127.563 60.965 38.8344 75.8471 106.062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59011 6.02017 7.94122 41.3207 23.5215

CAGE analysis