Hb_007483_040

Information

Type -
Description -
Location Contig7483: 15429-16938
Sequence    

Annotation

kegg
ID tcc:TCM_038224
description Senescence-related gene 1
nr
ID XP_012091874.1
description PREDICTED: protein SRG1-like [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JBK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21657 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56757: 15386-17079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_040 0.0 - - PREDICTED: protein SRG1-like [Jatropha curcas]
2 Hb_010697_030 0.0385458857 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_020480_050 0.0422227396 - - putative wall-associated kinase family protein [Populus trichocarpa]
4 Hb_009568_010 0.0434615357 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
5 Hb_000141_070 0.0444635475 - - l-lactate dehydrogenase, putative [Ricinus communis]
6 Hb_003334_080 0.0566206581 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_000712_070 0.0583655125 - - conserved hypothetical protein [Ricinus communis]
8 Hb_058620_050 0.0600483292 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_005614_040 0.0609425749 - - unnamed protein product [Coffea canephora]
10 Hb_001456_040 0.06163594 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
11 Hb_000446_100 0.0646610662 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_000503_040 0.0668374747 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_058620_040 0.0688931701 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
14 Hb_003090_070 0.0733198625 - - PREDICTED: laccase-7 [Jatropha curcas]
15 Hb_001699_240 0.0778297825 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
16 Hb_002553_170 0.0779284145 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
17 Hb_004693_010 0.0785046091 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
18 Hb_000500_190 0.0799411527 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
19 Hb_002805_230 0.0812103112 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
20 Hb_004254_070 0.0819775373 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]

Gene co-expression network

sample Hb_007483_040 Hb_007483_040 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_020480_050 Hb_020480_050 Hb_007483_040--Hb_020480_050 Hb_009568_010 Hb_009568_010 Hb_007483_040--Hb_009568_010 Hb_000141_070 Hb_000141_070 Hb_007483_040--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_010697_030--Hb_020480_050 Hb_000503_040 Hb_000503_040 Hb_010697_030--Hb_000503_040 Hb_000836_400 Hb_000836_400 Hb_010697_030--Hb_000836_400 Hb_010697_030--Hb_000141_070 Hb_010697_030--Hb_009568_010 Hb_001456_040 Hb_001456_040 Hb_020480_050--Hb_001456_040 Hb_000446_100 Hb_000446_100 Hb_020480_050--Hb_000446_100 Hb_020480_050--Hb_009568_010 Hb_004254_070 Hb_004254_070 Hb_020480_050--Hb_004254_070 Hb_009568_010--Hb_000141_070 Hb_009568_010--Hb_003334_080 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_000141_070--Hb_001456_040 Hb_003334_080--Hb_058620_040 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_003334_080--Hb_058620_050 Hb_002805_230 Hb_002805_230 Hb_000712_070--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000712_070--Hb_003090_070 Hb_000712_070--Hb_000141_070 Hb_000712_070--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_000712_070--Hb_004693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.05481 4.32128 2.73174 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 132.584 0.147662

CAGE analysis