Hb_007483_070

Information

Type -
Description -
Location Contig7483: 42489-47365
Sequence    

Annotation

kegg
ID rcu:RCOM_0634820
description vav3, putative
nr
ID XP_011005824.1
description PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S187
description Vav3, putative OS=Ricinus communis GN=RCOM_0634820 PE=4 SV=1
Gene Ontology
ID GO:0005515
description sh3 domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56761: 42531-47308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_070 0.0 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
2 Hb_001279_190 0.0449988985 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
3 Hb_001504_010 0.0480644372 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
4 Hb_008304_020 0.0671526658 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
5 Hb_000815_300 0.0726406641 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
6 Hb_000120_890 0.0737389322 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
7 Hb_011716_010 0.0743193014 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
8 Hb_002687_180 0.0747790999 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
9 Hb_003498_100 0.0756660114 - - component of oligomeric golgi complex, putative [Ricinus communis]
10 Hb_000029_400 0.0769962507 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
11 Hb_000579_080 0.0775286961 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
12 Hb_001227_120 0.0816326348 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
13 Hb_001635_110 0.0823236487 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
14 Hb_001799_160 0.0826640948 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000163_260 0.0830027709 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
16 Hb_002552_040 0.0836275568 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_000227_390 0.0845578084 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
18 Hb_000926_060 0.0850661348 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003540_050 0.0852267648 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
20 Hb_001053_190 0.0867013481 - - ADP,ATP carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007483_070 Hb_007483_070 Hb_001279_190 Hb_001279_190 Hb_007483_070--Hb_001279_190 Hb_001504_010 Hb_001504_010 Hb_007483_070--Hb_001504_010 Hb_008304_020 Hb_008304_020 Hb_007483_070--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_011716_010 Hb_011716_010 Hb_007483_070--Hb_011716_010 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_001504_010--Hb_008304_020 Hb_001504_010--Hb_000815_300 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_008304_020--Hb_003098_070 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_003498_100 Hb_003498_100 Hb_000120_890--Hb_003498_100 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_000120_890--Hb_001504_010 Hb_178968_060 Hb_178968_060 Hb_000120_890--Hb_178968_060 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020 Hb_011716_010--Hb_002687_180 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020 Hb_011716_010--Hb_004228_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.94597 8.45768 20.1993 16.2022 7.93744 4.56815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76793 6.48616 5.1648 11.6181 12.7025

CAGE analysis