Hb_007483_090

Information

Type -
Description -
Location Contig7483: 55772-56672
Sequence    

Annotation

kegg
ID rcu:RCOM_0634800
description hypothetical protein
nr
ID XP_002519754.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S185
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0634800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56765: 55605-56590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002119_100 0.0400020145 - - cytochrome B561, putative [Ricinus communis]
3 Hb_003417_050 0.04932687 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000329_780 0.0633046668 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
5 Hb_002062_010 0.0637620401 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_128986_010 0.0648361308 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015561_010 0.0702202548 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000017_180 0.0714854159 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
9 Hb_006242_050 0.0719364189 - - Osmotin precursor, putative [Ricinus communis]
10 Hb_002740_050 0.0756066562 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
11 Hb_000031_180 0.0773474306 - - sarcosine oxidase, putative [Ricinus communis]
12 Hb_000599_150 0.0784986915 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
13 Hb_000684_070 0.0791050181 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
14 Hb_005842_010 0.0864185261 - - nitrate transporter, putative [Ricinus communis]
15 Hb_004459_010 0.0879789341 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
16 Hb_005656_120 0.0880487027 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_052530_020 0.0889457562 - - cytochrome B5 isoform 1, putative [Ricinus communis]
18 Hb_143629_170 0.0898004079 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
19 Hb_003855_060 0.0905058615 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
20 Hb_005762_010 0.0910877032 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_007483_090 Hb_007483_090 Hb_002119_100 Hb_002119_100 Hb_007483_090--Hb_002119_100 Hb_003417_050 Hb_003417_050 Hb_007483_090--Hb_003417_050 Hb_000329_780 Hb_000329_780 Hb_007483_090--Hb_000329_780 Hb_002062_010 Hb_002062_010 Hb_007483_090--Hb_002062_010 Hb_128986_010 Hb_128986_010 Hb_007483_090--Hb_128986_010 Hb_015561_010 Hb_015561_010 Hb_007483_090--Hb_015561_010 Hb_002119_100--Hb_000329_780 Hb_002119_100--Hb_002062_010 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_002119_100--Hb_015561_010 Hb_003417_050--Hb_128986_010 Hb_003417_050--Hb_002062_010 Hb_005656_120 Hb_005656_120 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_006831_090 Hb_006831_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_002062_010--Hb_128986_010 Hb_002062_010--Hb_015561_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_005656_120 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_005656_120 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_009023_010 Hb_009023_010 Hb_015561_010--Hb_009023_010 Hb_015561_010--Hb_003417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.78102 5.17537 9.69063 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.159035 9.33615

CAGE analysis