Hb_007483_100

Information

Type -
Description -
Location Contig7483: 57446-59590
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34330g
description hypothetical protein
nr
ID XP_006369868.1
description hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
swissprot
ID Q9FHF9
description Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1
trembl
ID B9N9D4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s34330g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_100 0.0 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
2 Hb_002678_020 0.0703620604 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
3 Hb_004052_090 0.0771260161 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
4 Hb_004374_070 0.0813979818 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
5 Hb_009178_030 0.0833270711 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000206_240 0.0858407238 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000258_270 0.0882106301 - - PREDICTED: cullin-3A [Jatropha curcas]
8 Hb_002218_010 0.0942903116 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
9 Hb_034585_060 0.096262426 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
10 Hb_000204_210 0.0964628649 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
11 Hb_001507_020 0.0996933845 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
12 Hb_000723_130 0.100782608 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_004846_070 0.1008295802 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
14 Hb_012325_020 0.1009202129 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
15 Hb_007532_030 0.1009248054 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
16 Hb_000092_010 0.1009593691 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
17 Hb_000000_250 0.1030938395 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
18 Hb_085863_030 0.1032610046 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
19 Hb_000007_150 0.1039868031 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
20 Hb_008695_100 0.1045007016 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007483_100 Hb_007483_100 Hb_002678_020 Hb_002678_020 Hb_007483_100--Hb_002678_020 Hb_004052_090 Hb_004052_090 Hb_007483_100--Hb_004052_090 Hb_004374_070 Hb_004374_070 Hb_007483_100--Hb_004374_070 Hb_009178_030 Hb_009178_030 Hb_007483_100--Hb_009178_030 Hb_000206_240 Hb_000206_240 Hb_007483_100--Hb_000206_240 Hb_000258_270 Hb_000258_270 Hb_007483_100--Hb_000258_270 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_000427_050 Hb_000427_050 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_004052_090--Hb_000258_270 Hb_004052_090--Hb_000206_240 Hb_000836_040 Hb_000836_040 Hb_004052_090--Hb_000836_040 Hb_003371_090 Hb_003371_090 Hb_004052_090--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_004052_090--Hb_002218_010 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000206_240--Hb_000258_270 Hb_000258_270--Hb_000836_040 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.56339 0.605671 0.238467 0.306865 0.285039 0.789782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.480433 0.608133 1.2802 0.365948 0.452453

CAGE analysis