Hb_007508_040

Information

Type -
Description -
Location Contig7508: 37014-42303
Sequence    

Annotation

kegg
ID rcu:RCOM_1107030
description ATP synthase f1, gamma subunit, putative (EC:3.6.3.14)
nr
ID XP_012080377.1
description PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
swissprot
ID P26360
description ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2
trembl
ID A0A067K542
description ATP synthase subunit gamma OS=Jatropha curcas GN=JCGZ_11722 PE=3 SV=1
Gene Ontology
ID GO:0005618
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007508_040 0.0 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
2 Hb_000025_060 0.1583878108 - - unknown [Populus trichocarpa]
3 Hb_007765_010 0.2448219965 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007136_020 0.2460610621 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
5 Hb_000193_150 0.2518327225 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
6 Hb_170487_010 0.2534758357 - - -
7 Hb_156526_010 0.2568768102 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
8 Hb_170532_010 0.2581863041 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
9 Hb_160203_010 0.2589882703 - - -
10 Hb_000429_250 0.2593623253 - - hypothetical protein L484_000744 [Morus notabilis]
11 Hb_124961_010 0.2597239021 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
12 Hb_159307_010 0.2608783302 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_011139_060 0.2615666798 - - -
14 Hb_070385_010 0.264911918 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_015354_010 0.2671092756 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_087762_010 0.2677993683 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_078568_010 0.2698451083 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
18 Hb_002783_010 0.2705609109 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
19 Hb_142751_010 0.2709097209 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003598_040 0.2717828033 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]

Gene co-expression network

sample Hb_007508_040 Hb_007508_040 Hb_000025_060 Hb_000025_060 Hb_007508_040--Hb_000025_060 Hb_007765_010 Hb_007765_010 Hb_007508_040--Hb_007765_010 Hb_007136_020 Hb_007136_020 Hb_007508_040--Hb_007136_020 Hb_000193_150 Hb_000193_150 Hb_007508_040--Hb_000193_150 Hb_170487_010 Hb_170487_010 Hb_007508_040--Hb_170487_010 Hb_156526_010 Hb_156526_010 Hb_007508_040--Hb_156526_010 Hb_000025_060--Hb_156526_010 Hb_126112_010 Hb_126112_010 Hb_000025_060--Hb_126112_010 Hb_002045_140 Hb_002045_140 Hb_000025_060--Hb_002045_140 Hb_021888_110 Hb_021888_110 Hb_000025_060--Hb_021888_110 Hb_000523_100 Hb_000523_100 Hb_000025_060--Hb_000523_100 Hb_000866_420 Hb_000866_420 Hb_007765_010--Hb_000866_420 Hb_000429_250 Hb_000429_250 Hb_007765_010--Hb_000429_250 Hb_087762_010 Hb_087762_010 Hb_007765_010--Hb_087762_010 Hb_088065_010 Hb_088065_010 Hb_007765_010--Hb_088065_010 Hb_000035_130 Hb_000035_130 Hb_007765_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_007765_010--Hb_005965_010 Hb_124961_010 Hb_124961_010 Hb_007136_020--Hb_124961_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_007136_020--Hb_101020_010 Hb_170532_010 Hb_170532_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_000742_210 Hb_000742_210 Hb_000193_150--Hb_000742_210 Hb_002157_190 Hb_002157_190 Hb_000193_150--Hb_002157_190 Hb_035318_010 Hb_035318_010 Hb_000193_150--Hb_035318_010 Hb_000028_160 Hb_000028_160 Hb_000193_150--Hb_000028_160 Hb_003064_030 Hb_003064_030 Hb_000193_150--Hb_003064_030 Hb_000193_150--Hb_087762_010 Hb_001052_040 Hb_001052_040 Hb_170487_010--Hb_001052_040 Hb_015354_010 Hb_015354_010 Hb_170487_010--Hb_015354_010 Hb_099046_010 Hb_099046_010 Hb_170487_010--Hb_099046_010 Hb_000886_060 Hb_000886_060 Hb_170487_010--Hb_000886_060 Hb_173178_020 Hb_173178_020 Hb_170487_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_170487_010--Hb_000152_670 Hb_156526_010--Hb_002045_140 Hb_003061_010 Hb_003061_010 Hb_156526_010--Hb_003061_010 Hb_156526_010--Hb_126112_010 Hb_003073_050 Hb_003073_050 Hb_156526_010--Hb_003073_050 Hb_005511_100 Hb_005511_100 Hb_156526_010--Hb_005511_100 Hb_003297_010 Hb_003297_010 Hb_156526_010--Hb_003297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32098 0.648936 0.652541 0.788299 0.155478 2.96194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.346712 0.396752 0.0465741 0.00989906 0

CAGE analysis