Hb_007508_060

Information

Type -
Description -
Location Contig7508: 52773-57883
Sequence    

Annotation

kegg
ID rcu:RCOM_1469830
description hypothetical protein
nr
ID XP_012080381.1
description PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11724 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56836: 53588-54351 , PASA_asmbl_56837: 54437-57413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007508_060 0.0 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
2 Hb_000913_020 0.0726518657 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_009780_030 0.0846383201 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
4 Hb_000665_130 0.0934383039 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
5 Hb_001163_100 0.0939816939 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_000340_230 0.0949362684 - - synapse-associated protein, putative [Ricinus communis]
7 Hb_005686_090 0.100858905 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
8 Hb_032202_040 0.1031191029 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
9 Hb_005736_020 0.1051585894 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
10 Hb_000497_300 0.1055723881 - - peroxisomal membrane protein [Hevea brasiliensis]
11 Hb_000465_280 0.1074228461 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
12 Hb_000174_270 0.1098169825 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
13 Hb_001799_180 0.1116975868 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
14 Hb_001912_110 0.1125454047 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_001999_290 0.1142441005 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
16 Hb_000260_010 0.1146317652 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
17 Hb_000883_060 0.1148151531 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
18 Hb_000556_090 0.1163676669 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
19 Hb_000186_050 0.1163703736 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
20 Hb_004672_040 0.1170679 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]

Gene co-expression network

sample Hb_007508_060 Hb_007508_060 Hb_000913_020 Hb_000913_020 Hb_007508_060--Hb_000913_020 Hb_009780_030 Hb_009780_030 Hb_007508_060--Hb_009780_030 Hb_000665_130 Hb_000665_130 Hb_007508_060--Hb_000665_130 Hb_001163_100 Hb_001163_100 Hb_007508_060--Hb_001163_100 Hb_000340_230 Hb_000340_230 Hb_007508_060--Hb_000340_230 Hb_005686_090 Hb_005686_090 Hb_007508_060--Hb_005686_090 Hb_000913_020--Hb_009780_030 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_000913_020--Hb_000340_230 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_000913_020--Hb_001163_100 Hb_000768_200 Hb_000768_200 Hb_009780_030--Hb_000768_200 Hb_000207_330 Hb_000207_330 Hb_009780_030--Hb_000207_330 Hb_028697_010 Hb_028697_010 Hb_009780_030--Hb_028697_010 Hb_009780_030--Hb_001163_100 Hb_002276_020 Hb_002276_020 Hb_000665_130--Hb_002276_020 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_001369_750 Hb_001369_750 Hb_000665_130--Hb_001369_750 Hb_011316_090 Hb_011316_090 Hb_000665_130--Hb_011316_090 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490 Hb_004052_170 Hb_004052_170 Hb_000340_230--Hb_004052_170 Hb_029510_050 Hb_029510_050 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_000340_230--Hb_005686_090 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.79588 6.63646 2.57021 8.32399 5.14052 4.74831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47583 4.8554 9.3804 3.68386 11.0451

CAGE analysis