Hb_007508_070

Information

Type -
Description -
Location Contig7508: 58107-61602
Sequence    

Annotation

kegg
ID rcu:RCOM_1469720
description glycine-rich RNA-binding protein, putative
nr
ID XP_002514655.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9FNR1
description Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1
trembl
ID B9RLN6
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1469720 PE=4 SV=1
Gene Ontology
ID GO:0005739
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56839: 57879-61517 , PASA_asmbl_56840: 59445-59841
cDNA
(Sanger)
(ID:Location)		 030_K12.ab1: 60084-61517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007508_070 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_015001_020 0.0727378905 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_004812_010 0.075961592 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
4 Hb_001366_190 0.0761738573 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
5 Hb_001454_210 0.0793534615 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
6 Hb_000567_260 0.0814445561 - - BnaA09g41440D [Brassica napus]
7 Hb_028872_140 0.0843452831 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
8 Hb_005062_070 0.0846388703 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_000483_200 0.0877979241 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_060809_010 0.0880508306 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
11 Hb_002007_310 0.0885301261 - - cyclin family protein [Populus trichocarpa]
12 Hb_002835_410 0.0885512717 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
13 Hb_000032_570 0.0894507752 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
14 Hb_003728_020 0.0894623959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005063_040 0.0896171871 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
16 Hb_000665_040 0.0900507118 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
17 Hb_000160_170 0.0907822269 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
18 Hb_002097_110 0.0908104597 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_011918_080 0.0909486986 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
20 Hb_015306_020 0.0913069449 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007508_070 Hb_007508_070 Hb_015001_020 Hb_015001_020 Hb_007508_070--Hb_015001_020 Hb_004812_010 Hb_004812_010 Hb_007508_070--Hb_004812_010 Hb_001366_190 Hb_001366_190 Hb_007508_070--Hb_001366_190 Hb_001454_210 Hb_001454_210 Hb_007508_070--Hb_001454_210 Hb_000567_260 Hb_000567_260 Hb_007508_070--Hb_000567_260 Hb_028872_140 Hb_028872_140 Hb_007508_070--Hb_028872_140 Hb_002097_110 Hb_002097_110 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_015001_020--Hb_028872_140 Hb_000032_570 Hb_000032_570 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_001584_330 Hb_001584_330 Hb_004812_010--Hb_001584_330 Hb_001138_050 Hb_001138_050 Hb_004812_010--Hb_001138_050 Hb_006922_100 Hb_006922_100 Hb_004812_010--Hb_006922_100 Hb_002685_140 Hb_002685_140 Hb_004812_010--Hb_002685_140 Hb_001377_290 Hb_001377_290 Hb_004812_010--Hb_001377_290 Hb_000398_180 Hb_000398_180 Hb_001366_190--Hb_000398_180 Hb_000802_080 Hb_000802_080 Hb_001366_190--Hb_000802_080 Hb_001366_190--Hb_028872_140 Hb_001366_190--Hb_001454_210 Hb_005305_080 Hb_005305_080 Hb_001366_190--Hb_005305_080 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_028872_140 Hb_001454_210--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_028872_140--Hb_002811_360 Hb_028872_140--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.35 63.5186 28.2546 54.7923 212.228 195.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
241.184 171.824 197.926 87.6786 77.1296

CAGE analysis