Hb_007508_080

Information

Type -
Description -
Location Contig7508: 62157-63437
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06920g
description Presenilin-like family protein
nr
ID XP_012080384.1
description PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
swissprot
ID Q9SIK7
description Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1
trembl
ID A0A067KGG7
description Presenilin OS=Jatropha curcas GN=JCGZ_11726 PE=3 SV=1
Gene Ontology
ID GO:0000139
description presenilin-like protein at2g29900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56841: 62083-63508
cDNA
(Sanger)
(ID:Location)		 009_H02.ab1: 62083-62847 , 016_B16.ab1: 62083-62893 , 023_L15.ab1: 62083-62809 , 031_D05.ab1: 62083-62832

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007508_080 0.0 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
2 Hb_004668_060 0.0533350754 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
3 Hb_008103_020 0.0659782795 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
4 Hb_000139_130 0.0691613079 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
5 Hb_001377_160 0.0724218759 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_004109_230 0.0765542858 - - heat shock protein binding protein, putative [Ricinus communis]
7 Hb_005503_040 0.0778155405 - - PREDICTED: AMP deaminase [Jatropha curcas]
8 Hb_007426_130 0.0783342482 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_001147_110 0.0797317002 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
10 Hb_000922_370 0.0818231578 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
11 Hb_008253_030 0.0822029755 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
12 Hb_003943_010 0.0828326848 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001033_050 0.0831845259 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
14 Hb_000046_070 0.0833045039 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_001946_340 0.0833664838 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
16 Hb_007083_030 0.0834790143 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
17 Hb_000780_170 0.0840538453 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_000363_240 0.0861829265 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
19 Hb_002174_020 0.086442755 - - ring finger protein, putative [Ricinus communis]
20 Hb_000617_100 0.087044618 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]

Gene co-expression network

sample Hb_007508_080 Hb_007508_080 Hb_004668_060 Hb_004668_060 Hb_007508_080--Hb_004668_060 Hb_008103_020 Hb_008103_020 Hb_007508_080--Hb_008103_020 Hb_000139_130 Hb_000139_130 Hb_007508_080--Hb_000139_130 Hb_001377_160 Hb_001377_160 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_005503_040 Hb_005503_040 Hb_007508_080--Hb_005503_040 Hb_004668_060--Hb_001377_160 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_004668_060--Hb_000139_130 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_000027_050 Hb_000027_050 Hb_008103_020--Hb_000027_050 Hb_003943_010 Hb_003943_010 Hb_008103_020--Hb_003943_010 Hb_007426_130 Hb_007426_130 Hb_008103_020--Hb_007426_130 Hb_001147_110 Hb_001147_110 Hb_008103_020--Hb_001147_110 Hb_008253_030 Hb_008253_030 Hb_008103_020--Hb_008253_030 Hb_000139_130--Hb_001033_050 Hb_000139_130--Hb_004109_230 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_001377_160--Hb_003943_010 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.36 31.2254 14.81 28.6411 22.5096 29.8004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6703 9.59721 15.1552 21.1972 17.601

CAGE analysis