Hb_007520_020

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Location Contig7520: 26882-31719
Sequence    

Annotation

kegg
ID rcu:RCOM_1510580
description 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative (EC:1.1.1.267)
nr
ID BAF98290.1
description 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
swissprot
ID Q8W250
description 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2
trembl
ID A9ZN08
description 1-deoxy-D-xylulose-5-phosphate reductoisomerase OS=Hevea brasiliensis GN=HbDXR PE=2 SV=1
Gene Ontology
ID GO:0009570
description 1-deoxy-d-xylulose 5-phosphate reductoisomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56869: 26767-31639 , PASA_asmbl_56870: 27116-27229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_020 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
2 Hb_000036_050 0.0963486452 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
3 Hb_003849_240 0.1351190435 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_001799_190 0.1424831317 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
5 Hb_000009_120 0.1435112097 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
6 Hb_000640_130 0.1470719692 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
7 Hb_003927_010 0.1475140055 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
8 Hb_000083_270 0.1482884016 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
9 Hb_000215_100 0.1490585889 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005348_070 0.150127242 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002827_020 0.1533837107 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
12 Hb_000390_100 0.1536744546 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
13 Hb_002005_090 0.1547475161 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001369_230 0.1591950443 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
15 Hb_000809_180 0.1624033667 - - -
16 Hb_001414_040 0.1630879865 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
17 Hb_000631_110 0.1654253703 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
18 Hb_002153_030 0.1658133962 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
19 Hb_000081_120 0.1662228786 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
20 Hb_001514_130 0.1678695587 - - hypothetical protein JCGZ_16073 [Jatropha curcas]

Gene co-expression network

sample Hb_007520_020 Hb_007520_020 Hb_000036_050 Hb_000036_050 Hb_007520_020--Hb_000036_050 Hb_003849_240 Hb_003849_240 Hb_007520_020--Hb_003849_240 Hb_001799_190 Hb_001799_190 Hb_007520_020--Hb_001799_190 Hb_000009_120 Hb_000009_120 Hb_007520_020--Hb_000009_120 Hb_000640_130 Hb_000640_130 Hb_007520_020--Hb_000640_130 Hb_003927_010 Hb_003927_010 Hb_007520_020--Hb_003927_010 Hb_000283_150 Hb_000283_150 Hb_000036_050--Hb_000283_150 Hb_001514_130 Hb_001514_130 Hb_000036_050--Hb_001514_130 Hb_004136_040 Hb_004136_040 Hb_000036_050--Hb_004136_040 Hb_002827_020 Hb_002827_020 Hb_000036_050--Hb_002827_020 Hb_000036_050--Hb_000640_130 Hb_003849_240--Hb_000009_120 Hb_002005_090 Hb_002005_090 Hb_003849_240--Hb_002005_090 Hb_001031_090 Hb_001031_090 Hb_003849_240--Hb_001031_090 Hb_007765_030 Hb_007765_030 Hb_003849_240--Hb_007765_030 Hb_000395_220 Hb_000395_220 Hb_003849_240--Hb_000395_220 Hb_005333_050 Hb_005333_050 Hb_003849_240--Hb_005333_050 Hb_001699_150 Hb_001699_150 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001675_010 Hb_001675_010 Hb_001799_190--Hb_001675_010 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_000009_120--Hb_001414_040 Hb_002889_020 Hb_002889_020 Hb_000009_120--Hb_002889_020 Hb_000009_120--Hb_005333_050 Hb_006829_100 Hb_006829_100 Hb_000009_120--Hb_006829_100 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_001416_020 Hb_001416_020 Hb_000640_130--Hb_001416_020 Hb_000976_040 Hb_000976_040 Hb_000640_130--Hb_000976_040 Hb_000640_130--Hb_002005_090 Hb_011716_090 Hb_011716_090 Hb_000640_130--Hb_011716_090 Hb_000521_170 Hb_000521_170 Hb_000640_130--Hb_000521_170 Hb_003498_120 Hb_003498_120 Hb_003927_010--Hb_003498_120 Hb_039946_050 Hb_039946_050 Hb_003927_010--Hb_039946_050 Hb_000099_030 Hb_000099_030 Hb_003927_010--Hb_000099_030 Hb_003913_110 Hb_003913_110 Hb_003927_010--Hb_003913_110 Hb_001105_160 Hb_001105_160 Hb_003927_010--Hb_001105_160 Hb_007083_030 Hb_007083_030 Hb_003927_010--Hb_007083_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6681 107.924 22.9553 26.9194 34.4608 32.3374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.462 11.4351 20.1547 134.625 41.2647

CAGE analysis