Hb_007520_040

Information

Type -
Description -
Location Contig7520: 45939-48556
Sequence    

Annotation

kegg
ID rcu:RCOM_1510600
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_012080069.1
description PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
swissprot
ID P42737
description Beta carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=BCA2 PE=1 SV=3
trembl
ID A0A067K4N4
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_11478 PE=3 SV=1
Gene Ontology
ID GO:0004089
description carbonic anhydrase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_040 0.0 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
2 Hb_000445_450 0.0487257321 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_006355_030 0.1264519744 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
4 Hb_000500_110 0.1998493764 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_003057_080 0.2019009344 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
6 Hb_000213_130 0.2031942281 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
7 Hb_002876_310 0.2062725571 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
8 Hb_007072_020 0.2072846367 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
9 Hb_003096_050 0.208253534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002311_240 0.2108981478 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
11 Hb_002249_180 0.2129379088 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_002161_020 0.2173972613 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
13 Hb_010647_010 0.2175454182 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
14 Hb_012506_080 0.2259571467 - - amino acid transporter, putative [Ricinus communis]
15 Hb_001140_330 0.226544971 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
16 Hb_004267_050 0.226682375 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
17 Hb_001266_090 0.2277531723 - - -
18 Hb_001414_080 0.2284192177 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
19 Hb_001190_060 0.2290458364 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
20 Hb_000008_130 0.2291202919 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007520_040 Hb_007520_040 Hb_000445_450 Hb_000445_450 Hb_007520_040--Hb_000445_450 Hb_006355_030 Hb_006355_030 Hb_007520_040--Hb_006355_030 Hb_000500_110 Hb_000500_110 Hb_007520_040--Hb_000500_110 Hb_003057_080 Hb_003057_080 Hb_007520_040--Hb_003057_080 Hb_000213_130 Hb_000213_130 Hb_007520_040--Hb_000213_130 Hb_002876_310 Hb_002876_310 Hb_007520_040--Hb_002876_310 Hb_000445_450--Hb_006355_030 Hb_000445_450--Hb_002876_310 Hb_002249_180 Hb_002249_180 Hb_000445_450--Hb_002249_180 Hb_000445_450--Hb_000213_130 Hb_007072_020 Hb_007072_020 Hb_000445_450--Hb_007072_020 Hb_006355_030--Hb_003057_080 Hb_006355_030--Hb_007072_020 Hb_002311_240 Hb_002311_240 Hb_006355_030--Hb_002311_240 Hb_006355_030--Hb_000500_110 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000926_130 Hb_000926_130 Hb_000500_110--Hb_000926_130 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160 Hb_000500_110--Hb_007072_020 Hb_003057_080--Hb_000045_230 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_000347_550 Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_012506_080 Hb_012506_080 Hb_000213_130--Hb_012506_080 Hb_004267_050 Hb_004267_050 Hb_000213_130--Hb_004267_050 Hb_022250_050 Hb_022250_050 Hb_000213_130--Hb_022250_050 Hb_001140_330 Hb_001140_330 Hb_000213_130--Hb_001140_330 Hb_005120_010 Hb_005120_010 Hb_000213_130--Hb_005120_010 Hb_001040_190 Hb_001040_190 Hb_000213_130--Hb_001040_190 Hb_002570_020 Hb_002570_020 Hb_002876_310--Hb_002570_020 Hb_002876_310--Hb_002249_180 Hb_001948_040 Hb_001948_040 Hb_002876_310--Hb_001948_040 Hb_004503_010 Hb_004503_010 Hb_002876_310--Hb_004503_010 Hb_000712_060 Hb_000712_060 Hb_002876_310--Hb_000712_060 Hb_009026_040 Hb_009026_040 Hb_002876_310--Hb_009026_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118351 0.512989 0.0913034 0.249431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161579 24.3025 0.119973 226.26 0

CAGE analysis