Hb_007520_060

Information

Type -
Description -
Location Contig7520: 54541-65399
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08180g
description POPTRDRAFT_728586; exonuclease-related family protein
nr
ID XP_012080072.1
description PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
swissprot
ID Q7KWX9
description Putative exosome complex component rrp40 OS=Dictyostelium discoideum GN=exosc3 PE=3 SV=1
trembl
ID A0A067KGZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11480 PE=4 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component rrp40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_060 0.0 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
2 Hb_009659_020 0.0956660471 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
3 Hb_006541_020 0.1066767882 - - unknown [Lotus japonicus]
4 Hb_030565_040 0.1081427776 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_006718_010 0.1140374191 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
6 Hb_000367_210 0.1183037543 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
7 Hb_000419_130 0.1198014075 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
8 Hb_001623_430 0.1205770339 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
9 Hb_004223_260 0.1211055799 - - hypothetical protein F383_09277 [Gossypium arboreum]
10 Hb_000025_240 0.1212167207 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
11 Hb_002843_210 0.121402598 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
12 Hb_187083_010 0.1216132673 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
13 Hb_003349_070 0.1268034152 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
14 Hb_004333_030 0.1272516346 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
15 Hb_002320_060 0.1282034624 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
16 Hb_002025_300 0.1282422533 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
17 Hb_004041_040 0.1290802851 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
18 Hb_080477_060 0.1308218676 - - conserved hypothetical protein [Ricinus communis]
19 Hb_030954_020 0.1330987148 - - hypothetical protein RCOM_1330200 [Ricinus communis]
20 Hb_000367_030 0.1369871298 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]

Gene co-expression network

sample Hb_007520_060 Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_007520_060--Hb_009659_020 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130 Hb_030954_020 Hb_030954_020 Hb_009659_020--Hb_030954_020 Hb_080477_060 Hb_080477_060 Hb_009659_020--Hb_080477_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_001623_430 Hb_001623_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_000025_240 Hb_000025_240 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006541_020--Hb_006718_010 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_004333_030 Hb_004333_030 Hb_030565_040--Hb_004333_030 Hb_002320_060 Hb_002320_060 Hb_030565_040--Hb_002320_060 Hb_000318_490 Hb_000318_490 Hb_030565_040--Hb_000318_490 Hb_187083_010 Hb_187083_010 Hb_030565_040--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_030565_040--Hb_000236_460 Hb_002025_300 Hb_002025_300 Hb_006718_010--Hb_002025_300 Hb_006718_010--Hb_000367_030 Hb_006718_010--Hb_000025_240 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_000367_210--Hb_187083_010 Hb_000163_130 Hb_000163_130 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_003561_030 Hb_003561_030 Hb_000367_210--Hb_003561_030 Hb_000367_210--Hb_000820_130 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_001610_130 Hb_001610_130 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.464661 0.123788 0.173003 1.42436 0.613998 3.23811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18148 8.38935 3.01621 0.938958 0.461426

CAGE analysis