Hb_007520_070

Information

Type -
Description -
Location Contig7520: 57322-58632
Sequence    

Annotation

kegg
ID osa:4329502
description Os02g0522000
nr
ID XP_011070202.1
description PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID Q0E0U5
description Os02g0522000 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0522000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56877: 58084-58273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_070 0.0 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
2 Hb_041813_010 0.1983034568 - - conserved hypothetical protein [Ricinus communis]
3 Hb_062317_020 0.2099815117 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000968_070 0.2160878875 - - -
5 Hb_001320_020 0.2172914119 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_000076_050 0.2187900182 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
7 Hb_102602_020 0.2208914972 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
8 Hb_000454_160 0.2288502307 - - amidophosphoribosyltransferase, putative [Ricinus communis]
9 Hb_041813_040 0.2372745301 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
10 Hb_006405_040 0.2379075071 - - hypothetical protein VITISV_026680 [Vitis vinifera]
11 Hb_067472_010 0.2381206872 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
12 Hb_001496_050 0.2392172386 - - yth domain-containing protein, putative [Ricinus communis]
13 Hb_007793_030 0.2392367812 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
14 Hb_000574_330 0.241436378 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_041813_060 0.2420443537 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
16 Hb_012463_010 0.2492500659 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
17 Hb_011609_210 0.2492561005 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
18 Hb_053998_020 0.2527183237 - - -
19 Hb_002014_070 0.2527583148 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_007527_040 0.2574472584 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007520_070 Hb_007520_070 Hb_041813_010 Hb_041813_010 Hb_007520_070--Hb_041813_010 Hb_062317_020 Hb_062317_020 Hb_007520_070--Hb_062317_020 Hb_000968_070 Hb_000968_070 Hb_007520_070--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_007520_070--Hb_001320_020 Hb_000076_050 Hb_000076_050 Hb_007520_070--Hb_000076_050 Hb_102602_020 Hb_102602_020 Hb_007520_070--Hb_102602_020 Hb_041813_050 Hb_041813_050 Hb_041813_010--Hb_041813_050 Hb_041813_010--Hb_102602_020 Hb_041813_010--Hb_000076_050 Hb_000454_160 Hb_000454_160 Hb_041813_010--Hb_000454_160 Hb_027010_030 Hb_027010_030 Hb_041813_010--Hb_027010_030 Hb_062317_020--Hb_001320_020 Hb_001496_050 Hb_001496_050 Hb_062317_020--Hb_001496_050 Hb_062317_020--Hb_000968_070 Hb_007793_030 Hb_007793_030 Hb_062317_020--Hb_007793_030 Hb_034359_010 Hb_034359_010 Hb_062317_020--Hb_034359_010 Hb_000968_070--Hb_001496_050 Hb_000968_070--Hb_007793_030 Hb_000968_070--Hb_001320_020 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_001320_020--Hb_001496_050 Hb_001320_020--Hb_007793_030 Hb_000028_380 Hb_000028_380 Hb_001320_020--Hb_000028_380 Hb_003327_020 Hb_003327_020 Hb_000076_050--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_000076_050--Hb_000856_320 Hb_000958_100 Hb_000958_100 Hb_000076_050--Hb_000958_100 Hb_012305_110 Hb_012305_110 Hb_000076_050--Hb_012305_110 Hb_041813_040 Hb_041813_040 Hb_102602_020--Hb_041813_040 Hb_006405_040 Hb_006405_040 Hb_102602_020--Hb_006405_040 Hb_001385_070 Hb_001385_070 Hb_102602_020--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_102602_020--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.140866 0.0125998 0.096935 0 0.0750942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.053684 0.103438 0.477974

CAGE analysis