Hb_007527_010

Information

Type -
Description -
Location Contig7527: 419-6148
Sequence    

Annotation

kegg
ID rcu:RCOM_0785080
description hypothetical protein
nr
ID XP_002523227.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0785080 PE=4 SV=1
Gene Ontology
ID GO:0005741
description dgd1 suppressor 1 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56890: 1387-1886 , PASA_asmbl_56892: 4908-5078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007527_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000809_020 0.0806994827 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_001357_200 0.1172001664 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
4 Hb_011618_070 0.123294543 - - NMDA receptor-regulated protein [Medicago truncatula]
5 Hb_111552_010 0.1248887293 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
6 Hb_004774_090 0.1289674114 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
7 Hb_001014_070 0.1304391499 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
8 Hb_000025_350 0.1305097463 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
9 Hb_000243_260 0.1306141465 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
10 Hb_002539_070 0.1332831483 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
11 Hb_000304_080 0.1373324939 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
12 Hb_001124_130 0.1392624016 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_000586_020 0.1394530708 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
14 Hb_001014_060 0.1396690027 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
15 Hb_011377_040 0.1419898518 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
16 Hb_003913_130 0.1457087819 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
17 Hb_021510_010 0.1459982101 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
18 Hb_002445_030 0.1462660052 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
19 Hb_002042_050 0.1480713769 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_000880_070 0.1489320213 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_007527_010 Hb_007527_010 Hb_000809_020 Hb_000809_020 Hb_007527_010--Hb_000809_020 Hb_001357_200 Hb_001357_200 Hb_007527_010--Hb_001357_200 Hb_011618_070 Hb_011618_070 Hb_007527_010--Hb_011618_070 Hb_111552_010 Hb_111552_010 Hb_007527_010--Hb_111552_010 Hb_004774_090 Hb_004774_090 Hb_007527_010--Hb_004774_090 Hb_001014_070 Hb_001014_070 Hb_007527_010--Hb_001014_070 Hb_000809_020--Hb_011618_070 Hb_000243_260 Hb_000243_260 Hb_000809_020--Hb_000243_260 Hb_000809_020--Hb_111552_010 Hb_012539_060 Hb_012539_060 Hb_000809_020--Hb_012539_060 Hb_012632_010 Hb_012632_010 Hb_000809_020--Hb_012632_010 Hb_000025_350 Hb_000025_350 Hb_001357_200--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_001357_200--Hb_001014_060 Hb_003913_130 Hb_003913_130 Hb_001357_200--Hb_003913_130 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_011618_070--Hb_000243_260 Hb_001488_020 Hb_001488_020 Hb_011618_070--Hb_001488_020 Hb_003758_010 Hb_003758_010 Hb_011618_070--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_011618_070--Hb_002631_210 Hb_002042_050 Hb_002042_050 Hb_011618_070--Hb_002042_050 Hb_000206_160 Hb_000206_160 Hb_011618_070--Hb_000206_160 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040 Hb_004324_360 Hb_004324_360 Hb_004774_090--Hb_004324_360 Hb_004774_090--Hb_000956_040 Hb_000975_210 Hb_000975_210 Hb_004774_090--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004774_090--Hb_000788_030 Hb_000137_010 Hb_000137_010 Hb_004774_090--Hb_000137_010 Hb_001014_070--Hb_001014_060 Hb_001014_070--Hb_000025_350 Hb_000363_290 Hb_000363_290 Hb_001014_070--Hb_000363_290 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_074197_040 Hb_074197_040 Hb_001014_070--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.300474 1.31719 1.8989 0.873333 0.445588 0.903421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336059 0.506766 1.62002 1.22976 1.66567

CAGE analysis