Hb_007527_020

Information

Type -
Description -
Location Contig7527: 7867-9580
Sequence    

Annotation

kegg
ID tcc:TCM_040969
description Leucoanthocyanidin dioxygenase, putative
nr
ID XP_012076007.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
swissprot
ID Q9LHN8
description Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1
trembl
ID A0A067KQI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11110 PE=3 SV=1
Gene Ontology
ID GO:0016706
description feruloyl ortho-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56893: 7880-8147 , PASA_asmbl_56894: 8341-9585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007527_020 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
2 Hb_005356_010 0.0617661917 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
3 Hb_002805_230 0.0710963616 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
4 Hb_000281_200 0.0785480626 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_007532_050 0.0791167532 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
6 Hb_000513_110 0.079816307 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
7 Hb_001544_040 0.084874529 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
8 Hb_001134_040 0.0862376496 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
9 Hb_010407_120 0.0879002135 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
10 Hb_000712_070 0.0918292436 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003090_070 0.0923002289 - - PREDICTED: laccase-7 [Jatropha curcas]
12 Hb_001699_240 0.0958935372 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_000076_200 0.0967320844 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000503_040 0.0968290557 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_001901_090 0.0970373224 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000059_100 0.1026445655 - - Basic blue protein, putative [Ricinus communis]
17 Hb_004037_010 0.1035073283 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
18 Hb_039655_010 0.1057649028 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
19 Hb_000617_340 0.1059717794 - - respiratory burst oxidase B [Manihot esculenta]
20 Hb_058620_010 0.1068175743 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_007527_020 Hb_007527_020 Hb_005356_010 Hb_005356_010 Hb_007527_020--Hb_005356_010 Hb_002805_230 Hb_002805_230 Hb_007527_020--Hb_002805_230 Hb_000281_200 Hb_000281_200 Hb_007527_020--Hb_000281_200 Hb_007532_050 Hb_007532_050 Hb_007527_020--Hb_007532_050 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_007527_020--Hb_001544_040 Hb_005356_010--Hb_000281_200 Hb_000301_030 Hb_000301_030 Hb_005356_010--Hb_000301_030 Hb_178389_020 Hb_178389_020 Hb_005356_010--Hb_178389_020 Hb_005356_010--Hb_001544_040 Hb_001288_010 Hb_001288_010 Hb_005356_010--Hb_001288_010 Hb_003090_070 Hb_003090_070 Hb_002805_230--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_002805_230--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_004693_010 Hb_004693_010 Hb_002805_230--Hb_004693_010 Hb_000281_200--Hb_001288_010 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_000281_200--Hb_178389_020 Hb_039655_010 Hb_039655_010 Hb_000281_200--Hb_039655_010 Hb_007532_050--Hb_003090_070 Hb_000059_100 Hb_000059_100 Hb_007532_050--Hb_000059_100 Hb_000318_440 Hb_000318_440 Hb_007532_050--Hb_000318_440 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_000120_710 Hb_000120_710 Hb_000513_110--Hb_000120_710 Hb_003253_020 Hb_003253_020 Hb_000513_110--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000513_110--Hb_000617_340 Hb_000513_110--Hb_001544_040 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090 Hb_001544_040--Hb_000120_710 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_001544_040--Hb_003253_020 Hb_001544_040--Hb_000617_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.081131 2.25866 1.3694 3.36075 0.114047 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139199 0.0364956 0 53.7746 0.450157

CAGE analysis