Hb_007527_040

Information

Type -
Description -
Location Contig7527: 15763-18105
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23290g
description POPTRDRAFT_640727; ribose 5-phosphate isomerase family protein
nr
ID XP_012076005.1
description PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
swissprot
ID Q9C998
description Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana GN=RPI1 PE=1 SV=1
trembl
ID A0A067KEK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11107 PE=3 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007527_040 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
2 Hb_001365_010 0.1760532042 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_001942_020 0.1860845016 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
4 Hb_001310_050 0.1906409655 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_177343_010 0.1943948322 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
6 Hb_022213_030 0.194415721 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
7 Hb_000454_160 0.1969162108 - - amidophosphoribosyltransferase, putative [Ricinus communis]
8 Hb_062013_010 0.1970662757 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_021854_010 0.1995536888 - - -
10 Hb_000329_080 0.2006742414 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
11 Hb_000529_140 0.2028406369 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001109_160 0.2051444745 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000022_140 0.2073881506 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
14 Hb_059741_010 0.2081179138 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
15 Hb_163145_030 0.2092624018 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
16 Hb_000404_040 0.2097613111 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003778_020 0.2105410917 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_006040_170 0.2108892387 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
19 Hb_002943_010 0.2134486594 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
20 Hb_002805_090 0.2139607678 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007527_040 Hb_007527_040 Hb_001365_010 Hb_001365_010 Hb_007527_040--Hb_001365_010 Hb_001942_020 Hb_001942_020 Hb_007527_040--Hb_001942_020 Hb_001310_050 Hb_001310_050 Hb_007527_040--Hb_001310_050 Hb_177343_010 Hb_177343_010 Hb_007527_040--Hb_177343_010 Hb_022213_030 Hb_022213_030 Hb_007527_040--Hb_022213_030 Hb_000454_160 Hb_000454_160 Hb_007527_040--Hb_000454_160 Hb_001365_020 Hb_001365_020 Hb_001365_010--Hb_001365_020 Hb_000329_080 Hb_000329_080 Hb_001365_010--Hb_000329_080 Hb_000163_110 Hb_000163_110 Hb_001365_010--Hb_000163_110 Hb_000441_050 Hb_000441_050 Hb_001365_010--Hb_000441_050 Hb_003783_050 Hb_003783_050 Hb_001365_010--Hb_003783_050 Hb_035834_010 Hb_035834_010 Hb_001365_010--Hb_035834_010 Hb_001942_020--Hb_022213_030 Hb_001516_050 Hb_001516_050 Hb_001942_020--Hb_001516_050 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030 Hb_000313_230 Hb_000313_230 Hb_001310_050--Hb_000313_230 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_001310_050--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_001310_050--Hb_030312_030 Hb_036388_010 Hb_036388_010 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_022213_030--Hb_001516_050 Hb_001080_150 Hb_001080_150 Hb_022213_030--Hb_001080_150 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144811 0.460779 0.530342 1.03708 0.0525749 0.339584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.499223 0.808791 2.15168

CAGE analysis