Hb_007532_050

Information

Type -
Description -
Location Contig7532: 55890-57704
Sequence    

Annotation

kegg
ID rcu:RCOM_0632160
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_002519665.1
description 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
swissprot
ID Q9C6Z1
description Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1
trembl
ID B9S0Z6
description 9-cis-epoxycarotenoid dioxygenase, putative OS=Ricinus communis GN=RCOM_0632160 PE=4 SV=1
Gene Ontology
ID GO:0051213
description 9-cis-epoxycarotenoid dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007532_050 0.0 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
2 Hb_002805_230 0.0648229378 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
3 Hb_003090_070 0.0678631139 - - PREDICTED: laccase-7 [Jatropha curcas]
4 Hb_000059_100 0.0721221036 - - Basic blue protein, putative [Ricinus communis]
5 Hb_000318_440 0.0747534836 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
6 Hb_000076_200 0.0757042287 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007527_020 0.0791167532 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
8 Hb_004037_010 0.0816744686 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
9 Hb_010407_120 0.0840917278 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
10 Hb_000712_070 0.0880350239 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004693_010 0.09115278 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
12 Hb_001134_040 0.0977874121 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
13 Hb_001699_240 0.0984759317 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
14 Hb_039562_010 0.0987192903 - - PREDICTED: protein SRG1-like [Jatropha curcas]
15 Hb_000021_090 0.1012281301 - - -
16 Hb_005356_010 0.1035252174 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
17 Hb_003968_020 0.104649384 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
18 Hb_005614_040 0.1056086977 - - unnamed protein product [Coffea canephora]
19 Hb_000503_040 0.1070725038 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_001544_040 0.1073653102 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]

Gene co-expression network

sample Hb_007532_050 Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_007532_050--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_007532_050--Hb_003090_070 Hb_000059_100 Hb_000059_100 Hb_007532_050--Hb_000059_100 Hb_000318_440 Hb_000318_440 Hb_007532_050--Hb_000318_440 Hb_000076_200 Hb_000076_200 Hb_007532_050--Hb_000076_200 Hb_007527_020 Hb_007527_020 Hb_007532_050--Hb_007527_020 Hb_002805_230--Hb_003090_070 Hb_000712_070 Hb_000712_070 Hb_002805_230--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_004693_010 Hb_004693_010 Hb_002805_230--Hb_004693_010 Hb_003090_070--Hb_000712_070 Hb_003090_070--Hb_001134_040 Hb_003090_070--Hb_004693_010 Hb_003090_070--Hb_000059_100 Hb_005614_040 Hb_005614_040 Hb_000059_100--Hb_005614_040 Hb_000059_100--Hb_002805_230 Hb_000059_100--Hb_004693_010 Hb_000059_100--Hb_000318_440 Hb_039562_010 Hb_039562_010 Hb_000318_440--Hb_039562_010 Hb_000318_440--Hb_004693_010 Hb_000318_440--Hb_002805_230 Hb_000318_440--Hb_003090_070 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_004037_010 Hb_004037_010 Hb_000076_200--Hb_004037_010 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_000161_250 Hb_000161_250 Hb_000076_200--Hb_000161_250 Hb_000076_200--Hb_007527_020 Hb_007527_020--Hb_005356_010 Hb_007527_020--Hb_002805_230 Hb_000281_200 Hb_000281_200 Hb_007527_020--Hb_000281_200 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_007527_020--Hb_001544_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.415038 0.463277 1.24944 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0374187 17.6826 0.250145

CAGE analysis