Hb_007533_040

Information

Type -
Description -
Location Contig7533: 73565-83905
Sequence    

Annotation

kegg
ID rcu:RCOM_0553290
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002525110.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9LVQ8
description Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1
trembl
ID B9SGJ1
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0553290 PE=4 SV=1
Gene Ontology
ID GO:0009570
description probable protein phosphatase 2c 80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56942: 73350-83862
cDNA
(Sanger)
(ID:Location)		 028_J11.ab1: 82689-83862

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007533_040 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_004583_010 0.0661369106 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
3 Hb_000140_090 0.0710947245 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
4 Hb_003913_130 0.074192271 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
5 Hb_001357_200 0.0751776524 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
6 Hb_006740_030 0.0819942557 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_005601_040 0.0836182795 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
8 Hb_032202_040 0.0840380907 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
9 Hb_000256_040 0.0866934278 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
10 Hb_008421_020 0.0880623251 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
11 Hb_004108_160 0.0895239091 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_000027_260 0.0901052601 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
13 Hb_001541_120 0.090545247 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
14 Hb_001629_030 0.0922985997 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
15 Hb_000025_350 0.095279912 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
16 Hb_001818_100 0.0960714375 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
17 Hb_000928_070 0.0967213973 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_000925_130 0.0967386987 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
19 Hb_013405_020 0.0977330918 - - -
20 Hb_000120_640 0.0977519862 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007533_040 Hb_007533_040 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_000140_090 Hb_000140_090 Hb_007533_040--Hb_000140_090 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_007533_040--Hb_001357_200 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_001629_030 Hb_001629_030 Hb_004583_010--Hb_001629_030 Hb_008421_020 Hb_008421_020 Hb_004583_010--Hb_008421_020 Hb_004108_160 Hb_004108_160 Hb_004583_010--Hb_004108_160 Hb_003153_010 Hb_003153_010 Hb_004583_010--Hb_003153_010 Hb_001818_100 Hb_001818_100 Hb_004583_010--Hb_001818_100 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060 Hb_001357_200--Hb_000025_350 Hb_001357_200--Hb_001014_060 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_006740_030--Hb_001541_120 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_006740_030--Hb_008421_020 Hb_005601_040--Hb_001629_030 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.843 13.5106 25.7097 23.4702 9.74364 12.9828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6478 19.6304 32.7272 15.3575 26.8817

CAGE analysis