Hb_007534_020

Information

Type -
Description -
Location Contig7534: 14270-16103
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56947: 15110-32094
cDNA
(Sanger)
(ID:Location)		 032_N12.ab1: 15110-32094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_020 0.0 - - -
2 Hb_175976_010 0.1159292188 - - -
3 Hb_010368_030 0.1256835347 - - BnaA07g35570D [Brassica napus]
4 Hb_001017_060 0.1388251999 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_008221_110 0.1522874096 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
6 Hb_000127_090 0.1750492651 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006065_040 0.1772518127 - - -
8 Hb_014834_040 0.1883318157 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
9 Hb_000086_190 0.1911690139 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
10 Hb_000120_190 0.1967362185 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
11 Hb_014050_010 0.1993562365 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
12 Hb_002784_070 0.2001455828 - - BnaUnng01470D [Brassica napus]
13 Hb_001396_250 0.2005889771 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
14 Hb_166480_010 0.2033924283 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_000258_030 0.2040789509 - - -
16 Hb_001571_110 0.2086002876 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
17 Hb_001296_030 0.209077805 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
18 Hb_042710_010 0.2105717395 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_007763_050 0.2144632631 - - hypothetical protein L484_012752 [Morus notabilis]
20 Hb_000668_020 0.2151788401 - - -

Gene co-expression network

sample Hb_007534_020 Hb_007534_020 Hb_175976_010 Hb_175976_010 Hb_007534_020--Hb_175976_010 Hb_010368_030 Hb_010368_030 Hb_007534_020--Hb_010368_030 Hb_001017_060 Hb_001017_060 Hb_007534_020--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_007534_020--Hb_008221_110 Hb_000127_090 Hb_000127_090 Hb_007534_020--Hb_000127_090 Hb_006065_040 Hb_006065_040 Hb_007534_020--Hb_006065_040 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_008221_110 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_000127_090 Hb_175976_010--Hb_001017_060 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_010368_030--Hb_000120_190 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_166480_010 Hb_166480_010 Hb_010368_030--Hb_166480_010 Hb_001017_060--Hb_008221_110 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_011644_010 Hb_011644_010 Hb_001017_060--Hb_011644_010 Hb_008221_110--Hb_000127_090 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_008221_110--Hb_010368_030 Hb_000127_090--Hb_166480_010 Hb_000127_090--Hb_000258_030 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000127_090--Hb_000120_190 Hb_000668_020 Hb_000668_020 Hb_006065_040--Hb_000668_020 Hb_001584_320 Hb_001584_320 Hb_006065_040--Hb_001584_320 Hb_006065_040--Hb_000086_190 Hb_003029_100 Hb_003029_100 Hb_006065_040--Hb_003029_100 Hb_015026_150 Hb_015026_150 Hb_006065_040--Hb_015026_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368591 0 0.122226 6.36811 0.416719 13.592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21999 10.9823 2.24354 1.63913 0.407238

CAGE analysis