Hb_007534_040

Information

Type -
Description -
Location Contig7534: 42398-45241
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08090g
description POPTRDRAFT_832621; hypothetical protein
nr
ID XP_012073996.1
description PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KW35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09504 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56949: 42292-45156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_040 0.0 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
2 Hb_175612_010 0.0689946661 transcription factor TF Family: MBF1 orf [Ricinus communis]
3 Hb_000035_400 0.0750091413 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
4 Hb_000209_090 0.0800401236 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_000175_390 0.0834274693 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
6 Hb_000732_020 0.0902719614 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_001754_170 0.0906530015 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_001616_090 0.0915115448 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
9 Hb_000236_280 0.0917088133 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_073171_080 0.092234128 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
11 Hb_019871_020 0.0924721243 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
12 Hb_000165_130 0.0947015925 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
13 Hb_007757_100 0.0952483252 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
14 Hb_000363_340 0.0966951892 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
15 Hb_004374_150 0.0974450056 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
16 Hb_000318_140 0.0983311621 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_005000_270 0.0984236645 - - unnamed protein product [Vitis vinifera]
18 Hb_000236_300 0.0989686159 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
19 Hb_003384_030 0.0993435889 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
20 Hb_003716_020 0.0998690468 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]

Gene co-expression network

sample Hb_007534_040 Hb_007534_040 Hb_175612_010 Hb_175612_010 Hb_007534_040--Hb_175612_010 Hb_000035_400 Hb_000035_400 Hb_007534_040--Hb_000035_400 Hb_000209_090 Hb_000209_090 Hb_007534_040--Hb_000209_090 Hb_000175_390 Hb_000175_390 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_001754_170 Hb_001754_170 Hb_007534_040--Hb_001754_170 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_175612_010--Hb_000175_390 Hb_000236_300 Hb_000236_300 Hb_175612_010--Hb_000236_300 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_000318_140 Hb_000318_140 Hb_000035_400--Hb_000318_140 Hb_073171_080 Hb_073171_080 Hb_000035_400--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_000035_400--Hb_005129_050 Hb_000291_120 Hb_000291_120 Hb_000035_400--Hb_000291_120 Hb_000230_370 Hb_000230_370 Hb_000035_400--Hb_000230_370 Hb_000976_270 Hb_000976_270 Hb_000209_090--Hb_000976_270 Hb_003605_070 Hb_003605_070 Hb_000209_090--Hb_003605_070 Hb_001741_140 Hb_001741_140 Hb_000209_090--Hb_001741_140 Hb_004044_020 Hb_004044_020 Hb_000209_090--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000209_090--Hb_004525_100 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_000088_200 Hb_000088_200 Hb_000175_390--Hb_000088_200 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_000175_390--Hb_004044_020 Hb_000175_390--Hb_000156_140 Hb_002955_010 Hb_002955_010 Hb_000732_020--Hb_002955_010 Hb_113216_010 Hb_113216_010 Hb_000732_020--Hb_113216_010 Hb_001582_030 Hb_001582_030 Hb_000732_020--Hb_001582_030 Hb_002986_050 Hb_002986_050 Hb_000732_020--Hb_002986_050 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_001754_170--Hb_000236_300 Hb_001754_170--Hb_175612_010 Hb_000107_170 Hb_000107_170 Hb_001754_170--Hb_000107_170 Hb_001754_170--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
178.086 55.5625 36.9268 40.9971 216.217 223.993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.6627 77.2345 38.8514 36.0229 20.8973

CAGE analysis