Hb_007534_050

Information

Type -
Description -
Location Contig7534: 46403-54660
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25670g
description POPTRDRAFT_822660; hypothetical protein
nr
ID XP_012076082.1
description PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LU39
description Glutamyl-tRNA reductase-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GLUTRBP PE=1 SV=1
trembl
ID A0A067KHG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11919 PE=4 SV=1
Gene Ontology
ID GO:0009534
description glutamyl-trna reductase-binding chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56950: 46545-54639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_050 0.0 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_004440_060 0.0802218555 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_055619_010 0.0813867607 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_005127_030 0.0863632205 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_001578_020 0.0899014621 - - Protein virR, putative [Ricinus communis]
6 Hb_002811_010 0.098772444 - - cysteine synthase, putative [Ricinus communis]
7 Hb_000317_260 0.1006528879 - - unknown [Populus trichocarpa]
8 Hb_001946_140 0.1024542573 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_004644_030 0.1041454118 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_029920_030 0.1074901715 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
11 Hb_005731_160 0.1085103855 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001946_160 0.1086723764 - - putative chaperon P13.9 [Castanea sativa]
13 Hb_011689_120 0.1143234277 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
14 Hb_003747_230 0.1147402169 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
15 Hb_001369_790 0.1159747285 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
16 Hb_000172_580 0.11674967 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_006538_120 0.119019898 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
18 Hb_003813_020 0.1194818937 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
19 Hb_003411_090 0.1198924774 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
20 Hb_000394_180 0.1207539049 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]

Gene co-expression network

sample Hb_007534_050 Hb_007534_050 Hb_004440_060 Hb_004440_060 Hb_007534_050--Hb_004440_060 Hb_055619_010 Hb_055619_010 Hb_007534_050--Hb_055619_010 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_001578_020 Hb_001578_020 Hb_007534_050--Hb_001578_020 Hb_002811_010 Hb_002811_010 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_004440_060--Hb_001578_020 Hb_001369_790 Hb_001369_790 Hb_004440_060--Hb_001369_790 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_055619_010--Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_055619_010--Hb_005731_160 Hb_055619_010--Hb_001578_020 Hb_055619_010--Hb_004440_060 Hb_055619_010--Hb_004644_030 Hb_006538_120 Hb_006538_120 Hb_005127_030--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_005127_030--Hb_000221_140 Hb_005127_030--Hb_005731_160 Hb_012150_030 Hb_012150_030 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_001578_020--Hb_004644_030 Hb_008147_080 Hb_008147_080 Hb_001578_020--Hb_008147_080 Hb_001578_020--Hb_002811_010 Hb_002811_010--Hb_005731_160 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_000613_110 Hb_000613_110 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_000317_260--Hb_001369_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.07296 3.62491 27.0064 18.5584 6.67002 15.1817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7495 21.9693 13.5095 15.2561 42.6583

CAGE analysis