Hb_007537_030

Information

Type -
Description -
Location Contig7537: 37740-46606
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02170g
description POPTRDRAFT_652454; POLLEN-PISTIL INTERACTION 2 family protein
nr
ID XP_012081034.1
description PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q84P52
description Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1
trembl
ID A0A067K2H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16670 PE=3 SV=1
Gene Ontology
ID GO:0003867
description gamma aminobutyrate transaminase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56956: 37871-46537 , PASA_asmbl_56957: 40091-40310 , PASA_asmbl_56959: 44719-45135 , PASA_asmbl_56960: 45206-46433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007537_030 0.0 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
2 Hb_000570_020 0.082154875 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
3 Hb_000157_140 0.0896445976 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_004030_060 0.0954391493 - - receptor protein kinase zmpk1, putative [Ricinus communis]
5 Hb_018845_010 0.096214617 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_021576_070 0.0964126995 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
7 Hb_004326_010 0.0966612923 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_000152_710 0.0966988198 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
9 Hb_004109_050 0.097731602 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
10 Hb_000375_300 0.0982618042 - - PREDICTED: cyanate hydratase [Jatropha curcas]
11 Hb_007416_070 0.101312536 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
12 Hb_000928_120 0.102598142 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_147245_010 0.1026141209 - - casein kinase, putative [Ricinus communis]
14 Hb_000683_050 0.1038666082 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
15 Hb_001545_130 0.1045681091 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_004522_030 0.1061071673 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
17 Hb_000258_050 0.1089892595 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
18 Hb_003371_070 0.109123103 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
19 Hb_010390_010 0.1129038534 - - casein kinase, putative [Ricinus communis]
20 Hb_001619_060 0.1147259887 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007537_030 Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_007537_030--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_000157_140--Hb_004030_060 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000157_140--Hb_000570_020 Hb_000683_050 Hb_000683_050 Hb_004030_060--Hb_000683_050 Hb_000494_030 Hb_000494_030 Hb_004030_060--Hb_000494_030 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_010390_010 Hb_010390_010 Hb_004030_060--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_018845_010--Hb_000375_300 Hb_000009_060 Hb_000009_060 Hb_018845_010--Hb_000009_060 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_007416_070 Hb_007416_070 Hb_018845_010--Hb_007416_070 Hb_001616_070 Hb_001616_070 Hb_018845_010--Hb_001616_070 Hb_000152_710 Hb_000152_710 Hb_021576_070--Hb_000152_710 Hb_004109_050 Hb_004109_050 Hb_021576_070--Hb_004109_050 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_001754_020 Hb_001754_020 Hb_021576_070--Hb_001754_020 Hb_004326_010--Hb_000570_020 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96352 12.6466 17.3605 40.5932 3.09014 4.83405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33255 7.71871 6.69949 19.7006 22.3053

CAGE analysis