Hb_007537_040

Information

Type -
Description -
Location Contig7537: 46957-48469
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G024400g
description hypothetical protein
nr
ID XP_012491170.1
description PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TGS2
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G173900 PE=4 SV=1
Gene Ontology
ID GO:0000023
description 3-isopropylmalate dehydratase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56962: 46757-48483
cDNA
(Sanger)
(ID:Location)		 028_C04.ab1: 46957-48473 , 030_H23.ab1: 46779-48483

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007537_040 0.0 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
2 Hb_008225_050 0.0346816477 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
3 Hb_000369_110 0.0545804261 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_003025_160 0.0574944631 - - Protein HVA22, putative [Ricinus communis]
5 Hb_004970_060 0.0594743211 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
6 Hb_001735_040 0.0597047686 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
7 Hb_002752_020 0.060404215 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
8 Hb_000254_130 0.0641717472 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
9 Hb_002121_050 0.0644631127 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
10 Hb_002028_020 0.0650704084 - - acyltransferase, putative [Ricinus communis]
11 Hb_003371_080 0.0703983351 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
12 Hb_156093_010 0.0707852091 - - hypothetical protein RCOM_0504250 [Ricinus communis]
13 Hb_000418_130 0.0712030351 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
14 Hb_008195_070 0.0732978813 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_149644_030 0.0736879107 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
16 Hb_004032_400 0.0740272945 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
17 Hb_001488_230 0.0741290535 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
18 Hb_001975_100 0.0746519597 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
19 Hb_000497_050 0.0753241339 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
20 Hb_001999_230 0.0768978314 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]

Gene co-expression network

sample Hb_007537_040 Hb_007537_040 Hb_008225_050 Hb_008225_050 Hb_007537_040--Hb_008225_050 Hb_000369_110 Hb_000369_110 Hb_007537_040--Hb_000369_110 Hb_003025_160 Hb_003025_160 Hb_007537_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_007537_040--Hb_004970_060 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_002752_020 Hb_002752_020 Hb_007537_040--Hb_002752_020 Hb_000254_130 Hb_000254_130 Hb_008225_050--Hb_000254_130 Hb_008225_050--Hb_003025_160 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_000369_110--Hb_003025_160 Hb_002121_050 Hb_002121_050 Hb_000369_110--Hb_002121_050 Hb_000369_110--Hb_008225_050 Hb_000369_110--Hb_002752_020 Hb_000369_110--Hb_000254_130 Hb_003025_160--Hb_000254_130 Hb_003025_160--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_001999_230 Hb_001999_230 Hb_003025_160--Hb_001999_230 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_028491_010 Hb_028491_010 Hb_001735_040--Hb_028491_010 Hb_000418_130 Hb_000418_130 Hb_001735_040--Hb_000418_130 Hb_001735_040--Hb_008225_050 Hb_004607_110 Hb_004607_110 Hb_001735_040--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_001735_040--Hb_029991_010 Hb_000497_050 Hb_000497_050 Hb_002752_020--Hb_000497_050 Hb_146255_030 Hb_146255_030 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_001277_350 Hb_001277_350 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.81618 32.1221 18.9799 0 0.0868312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.935222 45.4307

CAGE analysis