Hb_007543_020

Information

Type -
Description -
Location Contig7543: 7689-15480
Sequence    

Annotation

kegg
ID bdi:100831159
description uncharacterized LOC100831159
nr
ID XP_009780488.1
description PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q01HK6
description H0211F06-OSIGBa0153M17.12 protein OS=Oryza sativa GN=H0211F06-OSIGBa0153M17.12 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007543_020 0.0 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
2 Hb_000820_100 0.0627795157 - - RNA-directed DNA polymerase [Arachis hypogaea]
3 Hb_001366_260 0.0879831416 - - T4.15 [Malus x robusta]
4 Hb_116784_020 0.1110978553 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_009434_060 0.1130158329 - - T4.15 [Malus x robusta]
6 Hb_000060_130 0.1161879293 - - -
7 Hb_000123_340 0.119123967 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
8 Hb_000173_110 0.1197246135 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
9 Hb_001385_070 0.1239139919 - - hypothetical protein VITISV_019194 [Vitis vinifera]
10 Hb_067472_010 0.1287046619 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
11 Hb_142522_040 0.1298858069 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_004520_010 0.130220871 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_002013_030 0.130277763 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
14 Hb_005092_090 0.1305837184 - - cold regulated protein [Manihot esculenta]
15 Hb_000352_060 0.1342256984 - - RNA-directed DNA polymerase [Arachis hypogaea]
16 Hb_011649_030 0.1375186438 - - hypothetical protein [Vitis hybrid cultivar]
17 Hb_011472_050 0.1466428256 - - -
18 Hb_004899_210 0.1481679264 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
19 Hb_003302_010 0.1502036552 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
20 Hb_001946_130 0.1503093414 - - -

Gene co-expression network

sample Hb_007543_020 Hb_007543_020 Hb_000820_100 Hb_000820_100 Hb_007543_020--Hb_000820_100 Hb_001366_260 Hb_001366_260 Hb_007543_020--Hb_001366_260 Hb_116784_020 Hb_116784_020 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_000123_340 Hb_000123_340 Hb_007543_020--Hb_000123_340 Hb_000820_100--Hb_001366_260 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_116784_020--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_009434_060--Hb_001366_260 Hb_009434_060--Hb_000820_100 Hb_011472_050 Hb_011472_050 Hb_009434_060--Hb_011472_050 Hb_009434_060--Hb_116784_020 Hb_009434_060--Hb_000173_110 Hb_000060_130--Hb_005092_090 Hb_000060_130--Hb_116784_020 Hb_003302_010 Hb_003302_010 Hb_000060_130--Hb_003302_010 Hb_004899_210 Hb_004899_210 Hb_000060_130--Hb_004899_210 Hb_000060_130--Hb_001366_260 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000123_340--Hb_000173_110 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0418975 1.56454 0.765609 0.263155 0.097671 0.0841773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0109 0 0.0494206 1.02607 5.58773

CAGE analysis