Hb_007545_020

Information

Type -
Description -
Location Contig7545: 11597-12879
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022461mg
description hypothetical protein
nr
ID XP_009601042.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M5WKD8
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022461mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
2 Hb_003209_160 0.1817854055 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
3 Hb_028755_010 0.2180122989 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
4 Hb_164370_010 0.2784513527 - - -
5 Hb_001846_050 0.2896292053 - - -
6 Hb_001965_010 0.2914159679 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_010317_030 0.3095141361 - - unknown [Picea sitchensis]
8 Hb_024272_010 0.3107386519 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_021068_010 0.3157279285 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
10 Hb_002733_030 0.3192394148 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
11 Hb_001703_120 0.319280628 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
12 Hb_004738_050 0.3240498947 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
13 Hb_022288_020 0.3387842118 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
14 Hb_071869_010 0.3401616886 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
15 Hb_002490_050 0.3425959024 - - Os02g0182500, partial [Oryza sativa Japonica Group]
16 Hb_007827_020 0.3448624064 - - -
17 Hb_000445_080 0.3452579097 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
18 Hb_168343_010 0.3474728297 - - sensory transduction histidine kinase, putative [Ricinus communis]
19 Hb_062482_010 0.3476083872 - - -
20 Hb_005656_060 0.3522278067 - - -

Gene co-expression network

sample Hb_007545_020 Hb_007545_020 Hb_003209_160 Hb_003209_160 Hb_007545_020--Hb_003209_160 Hb_028755_010 Hb_028755_010 Hb_007545_020--Hb_028755_010 Hb_164370_010 Hb_164370_010 Hb_007545_020--Hb_164370_010 Hb_001846_050 Hb_001846_050 Hb_007545_020--Hb_001846_050 Hb_001965_010 Hb_001965_010 Hb_007545_020--Hb_001965_010 Hb_010317_030 Hb_010317_030 Hb_007545_020--Hb_010317_030 Hb_003209_160--Hb_164370_010 Hb_002490_050 Hb_002490_050 Hb_003209_160--Hb_002490_050 Hb_005356_060 Hb_005356_060 Hb_003209_160--Hb_005356_060 Hb_050286_020 Hb_050286_020 Hb_003209_160--Hb_050286_020 Hb_138652_020 Hb_138652_020 Hb_003209_160--Hb_138652_020 Hb_005081_040 Hb_005081_040 Hb_028755_010--Hb_005081_040 Hb_028755_010--Hb_001846_050 Hb_062482_010 Hb_062482_010 Hb_028755_010--Hb_062482_010 Hb_168343_010 Hb_168343_010 Hb_028755_010--Hb_168343_010 Hb_028755_010--Hb_164370_010 Hb_002141_040 Hb_002141_040 Hb_164370_010--Hb_002141_040 Hb_004738_050 Hb_004738_050 Hb_164370_010--Hb_004738_050 Hb_002639_060 Hb_002639_060 Hb_164370_010--Hb_002639_060 Hb_001846_050--Hb_168343_010 Hb_015930_010 Hb_015930_010 Hb_001846_050--Hb_015930_010 Hb_000445_080 Hb_000445_080 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_001846_050--Hb_094647_010 Hb_001846_050--Hb_004738_050 Hb_001496_030 Hb_001496_030 Hb_001965_010--Hb_001496_030 Hb_167300_010 Hb_167300_010 Hb_001965_010--Hb_167300_010 Hb_002733_030 Hb_002733_030 Hb_001965_010--Hb_002733_030 Hb_002686_380 Hb_002686_380 Hb_001965_010--Hb_002686_380 Hb_001703_120 Hb_001703_120 Hb_001965_010--Hb_001703_120 Hb_024272_010 Hb_024272_010 Hb_010317_030--Hb_024272_010 Hb_007827_020 Hb_007827_020 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_071869_010 Hb_071869_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060 Hb_001983_010 Hb_001983_010 Hb_010317_030--Hb_001983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153869 0 0 0 0.0482173 0.488613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.16148 0.0388478 0.178402

CAGE analysis