Hb_007545_030

Information

Type -
Description -
Location Contig7545: 12633-15513
Sequence    

Annotation

kegg
ID rcu:RCOM_0845230
description hypothetical protein
nr
ID XP_002530952.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O64668
description Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=1 SV=1
trembl
ID B9SY83
description Presenilin OS=Ricinus communis GN=RCOM_0845230 PE=3 SV=1
Gene Ontology
ID GO:0000139
description presenilin-like protein at1g08700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56982: 12640-15435
cDNA
(Sanger)
(ID:Location)		 009_B17.ab1: 12640-14195 , 036_B19.ab1: 12640-14264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000739_310 0.0772333926 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
3 Hb_024570_010 0.0802455902 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_000261_350 0.0987121283 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
5 Hb_001019_190 0.1007149239 - - conserved hypothetical protein [Ricinus communis]
6 Hb_028089_010 0.101968474 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
7 Hb_000032_100 0.102346536 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
8 Hb_005054_100 0.1036861804 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
9 Hb_012799_030 0.1036928482 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
10 Hb_000072_220 0.1039587139 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
11 Hb_000832_020 0.1041941294 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
12 Hb_000300_050 0.1055628018 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004046_020 0.1058080639 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
14 Hb_003001_150 0.1062358066 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000796_040 0.1064461788 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_001100_050 0.1067473276 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
17 Hb_002685_210 0.1072315203 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_003170_040 0.1078851731 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
19 Hb_001675_180 0.1084228 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_000169_090 0.1088898977 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007545_030 Hb_007545_030 Hb_000739_310 Hb_000739_310 Hb_007545_030--Hb_000739_310 Hb_024570_010 Hb_024570_010 Hb_007545_030--Hb_024570_010 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_001019_190 Hb_001019_190 Hb_007545_030--Hb_001019_190 Hb_028089_010 Hb_028089_010 Hb_007545_030--Hb_028089_010 Hb_000032_100 Hb_000032_100 Hb_007545_030--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000739_310--Hb_000707_050 Hb_000832_020 Hb_000832_020 Hb_000739_310--Hb_000832_020 Hb_000739_310--Hb_024570_010 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_000739_310--Hb_001019_190 Hb_024570_010--Hb_028089_010 Hb_024570_010--Hb_001019_190 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_000819_080 Hb_000819_080 Hb_024570_010--Hb_000819_080 Hb_001675_180 Hb_001675_180 Hb_000261_350--Hb_001675_180 Hb_010417_050 Hb_010417_050 Hb_000261_350--Hb_010417_050 Hb_172632_080 Hb_172632_080 Hb_000261_350--Hb_172632_080 Hb_002493_020 Hb_002493_020 Hb_000261_350--Hb_002493_020 Hb_002811_060 Hb_002811_060 Hb_000261_350--Hb_002811_060 Hb_005054_100 Hb_005054_100 Hb_000261_350--Hb_005054_100 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_001019_190--Hb_000819_080 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020 Hb_000032_100--Hb_000832_020 Hb_019654_190 Hb_019654_190 Hb_000032_100--Hb_019654_190 Hb_000723_130 Hb_000723_130 Hb_000032_100--Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000032_100--Hb_002311_040 Hb_090804_010 Hb_090804_010 Hb_000032_100--Hb_090804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2847 7.01819 6.11727 11.1362 21.345 22.7359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4813 8.77194 25.3402 11.0448 19.7351

CAGE analysis