Hb_007545_040

Information

Type -
Description -
Location Contig7545: 15919-25910
Sequence    

Annotation

kegg
ID bvg:104884077
description uncharacterized LOC104884077
nr
ID XP_010666974.1
description PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID C5XQ47
description Putative uncharacterized protein Sb03g006485 (Fragment) OS=Sorghum bicolor GN=Sb03g006485 PE=4 SV=1
Gene Ontology
ID GO:0044424
description alanyl-trna synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_040 0.0 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
2 Hb_162189_010 0.0059854325 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_004324_170 0.0071669066 - - -
4 Hb_156850_010 0.0609154909 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
5 Hb_001247_340 0.0808185596 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_132840_040 0.1349404212 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
7 Hb_000093_070 0.1444071138 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
8 Hb_087999_010 0.1451100567 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
9 Hb_004491_020 0.1472855876 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
10 Hb_000264_150 0.1562483763 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
11 Hb_001722_090 0.1863984544 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_001709_100 0.1872424807 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_009078_040 0.1928088965 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_011349_010 0.283438864 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
15 Hb_022680_020 0.2885010038 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
16 Hb_015183_040 0.3171947367 - - -
17 Hb_009083_040 0.3179434922 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
18 Hb_001205_010 0.3626261702 - - -
19 Hb_000313_020 0.3682502193 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
20 Hb_000574_500 0.3745930488 - - hypothetical protein JCGZ_06123 [Jatropha curcas]

Gene co-expression network

sample Hb_007545_040 Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_007545_040--Hb_162189_010 Hb_004324_170 Hb_004324_170 Hb_007545_040--Hb_004324_170 Hb_156850_010 Hb_156850_010 Hb_007545_040--Hb_156850_010 Hb_001247_340 Hb_001247_340 Hb_007545_040--Hb_001247_340 Hb_132840_040 Hb_132840_040 Hb_007545_040--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_007545_040--Hb_000093_070 Hb_162189_010--Hb_004324_170 Hb_162189_010--Hb_156850_010 Hb_162189_010--Hb_001247_340 Hb_162189_010--Hb_132840_040 Hb_004491_020 Hb_004491_020 Hb_162189_010--Hb_004491_020 Hb_004324_170--Hb_156850_010 Hb_004324_170--Hb_001247_340 Hb_004324_170--Hb_132840_040 Hb_004324_170--Hb_000093_070 Hb_156850_010--Hb_132840_040 Hb_156850_010--Hb_000093_070 Hb_087999_010 Hb_087999_010 Hb_156850_010--Hb_087999_010 Hb_001247_340--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_001247_340--Hb_000264_150 Hb_001722_090 Hb_001722_090 Hb_001247_340--Hb_001722_090 Hb_132840_040--Hb_000093_070 Hb_132840_040--Hb_087999_010 Hb_009078_040 Hb_009078_040 Hb_132840_040--Hb_009078_040 Hb_000093_070--Hb_087999_010 Hb_000093_070--Hb_009078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0841227 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123128 0 0 0 0

CAGE analysis