Hb_007545_050

Information

Type -
Description -
Location Contig7545: 17006-17900
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56983: 15625-16555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_050 0.0 - - -
2 Hb_000994_110 0.1259959161 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010504_030 0.1340422924 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
4 Hb_182964_010 0.1384686599 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
5 Hb_166480_010 0.153388361 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
6 Hb_006995_040 0.1563954573 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
7 Hb_082407_010 0.1575404739 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
8 Hb_014834_140 0.1586717358 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
9 Hb_001396_250 0.1606574246 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
10 Hb_008221_110 0.1606863424 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
11 Hb_000127_090 0.1615475078 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000015_070 0.1658593103 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
13 Hb_000007_460 0.1681098277 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
14 Hb_005367_010 0.1710875674 - - -
15 Hb_000327_290 0.1716327877 - - Histone H4 [Triticum urartu]
16 Hb_000001_040 0.1747438074 - - unnamed protein product [Coffea canephora]
17 Hb_000265_130 0.1856302567 - - -
18 Hb_001220_010 0.1907422286 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
19 Hb_007188_020 0.193425734 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
20 Hb_004807_060 0.1945813578 - - -

Gene co-expression network

sample Hb_007545_050 Hb_007545_050 Hb_000994_110 Hb_000994_110 Hb_007545_050--Hb_000994_110 Hb_010504_030 Hb_010504_030 Hb_007545_050--Hb_010504_030 Hb_182964_010 Hb_182964_010 Hb_007545_050--Hb_182964_010 Hb_166480_010 Hb_166480_010 Hb_007545_050--Hb_166480_010 Hb_006995_040 Hb_006995_040 Hb_007545_050--Hb_006995_040 Hb_082407_010 Hb_082407_010 Hb_007545_050--Hb_082407_010 Hb_000994_110--Hb_182964_010 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_001233_020 Hb_001233_020 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_182964_010--Hb_006995_040 Hb_016604_030 Hb_016604_030 Hb_182964_010--Hb_016604_030 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_001754_070 Hb_001754_070 Hb_182964_010--Hb_001754_070 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_000656_340 Hb_000656_340 Hb_006995_040--Hb_000656_340 Hb_002284_050 Hb_002284_050 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_006995_040--Hb_014834_140 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23118 6.57048 3.4659 41.9269 8.27811 67.0758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.677 45.2023 5.2317 3.28853 0.760991

CAGE analysis