Hb_007545_130

Information

Type -
Description -
Location Contig7545: 70334-77731
Sequence    

Annotation

kegg
ID rcu:RCOM_0844850
description hypothetical protein
nr
ID XP_012070361.1
description PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8S9K3
description Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2
trembl
ID A0A067KU03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02652 PE=4 SV=1
Gene Ontology
ID GO:0016740
description zinc finger protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56997: 70410-77523
cDNA
(Sanger)
(ID:Location)		 009_F05.ab1: 70412-70917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_130 0.0 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
2 Hb_003506_050 0.0551158428 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_013459_010 0.0558634876 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
4 Hb_005250_030 0.0671460082 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
5 Hb_000925_090 0.0727864195 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
6 Hb_002600_060 0.0737749784 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
7 Hb_005211_020 0.0816252982 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
8 Hb_005701_130 0.0850059833 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
9 Hb_006618_050 0.0889075865 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
10 Hb_065408_010 0.0914789583 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_000331_560 0.0917143352 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
12 Hb_001726_100 0.0929553992 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
13 Hb_099270_030 0.0951589875 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
14 Hb_005488_170 0.0951691032 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
15 Hb_003124_100 0.0958411382 - - -
16 Hb_000815_170 0.0961446713 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_001133_030 0.096643393 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
18 Hb_000714_040 0.0973645939 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
19 Hb_012053_090 0.0977396406 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
20 Hb_007120_060 0.0988899559 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007545_130 Hb_007545_130 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_013459_010 Hb_013459_010 Hb_007545_130--Hb_013459_010 Hb_005250_030 Hb_005250_030 Hb_007545_130--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_003506_050--Hb_002600_060 Hb_003506_050--Hb_000925_090 Hb_000331_560 Hb_000331_560 Hb_003506_050--Hb_000331_560 Hb_006618_050 Hb_006618_050 Hb_003506_050--Hb_006618_050 Hb_003506_050--Hb_005250_030 Hb_013459_010--Hb_005250_030 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_000815_170 Hb_000815_170 Hb_013459_010--Hb_000815_170 Hb_005250_030--Hb_000815_170 Hb_005250_030--Hb_006618_050 Hb_156279_010 Hb_156279_010 Hb_005250_030--Hb_156279_010 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_002600_060--Hb_000331_560 Hb_002600_060--Hb_005211_020 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_002600_060--Hb_000083_070 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_005211_020--Hb_000925_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.47616 12.0781 7.10359 5.54759 7.74878 9.79715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96858 3.18194 5.36481 8.75272 23.573

CAGE analysis