Hb_007545_140

Information

Type transcription factor
Description TF Family: MYB
Location Contig7545: 95705-98162
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06320g
description POPTRDRAFT_571286; hypothetical protein
nr
ID XP_011047039.1
description PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9I655
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s06320g PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-like protein q

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56998: 96035-96487 , PASA_asmbl_56999: 97887-98267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_140 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
2 Hb_032225_030 0.1558882679 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
3 Hb_002597_010 0.1618017834 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
4 Hb_005152_010 0.1692881747 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
5 Hb_000589_210 0.1806435667 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
6 Hb_001369_140 0.1813692304 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000380_210 0.1874146401 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
8 Hb_000915_070 0.191909352 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000032_560 0.1928788162 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
10 Hb_003893_140 0.1929513324 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
11 Hb_000056_220 0.1931636551 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
12 Hb_000347_230 0.193628496 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
13 Hb_018133_110 0.1984924744 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000005_230 0.2007294198 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
15 Hb_006788_010 0.2060202518 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
16 Hb_025254_020 0.2080515138 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
17 Hb_007403_040 0.2092093205 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002835_350 0.2093411435 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
19 Hb_003972_060 0.2100205227 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
20 Hb_001863_200 0.2142635586 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_007545_140 Hb_007545_140 Hb_032225_030 Hb_032225_030 Hb_007545_140--Hb_032225_030 Hb_002597_010 Hb_002597_010 Hb_007545_140--Hb_002597_010 Hb_005152_010 Hb_005152_010 Hb_007545_140--Hb_005152_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_001369_140 Hb_001369_140 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_000032_560 Hb_000032_560 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_000922_010 Hb_000922_010 Hb_005152_010--Hb_000922_010 Hb_005152_010--Hb_002597_010 Hb_064122_010 Hb_064122_010 Hb_005152_010--Hb_064122_010 Hb_005152_010--Hb_030982_060 Hb_002471_260 Hb_002471_260 Hb_005152_010--Hb_002471_260 Hb_000589_210--Hb_002597_010 Hb_011214_120 Hb_011214_120 Hb_000589_210--Hb_011214_120 Hb_025254_020 Hb_025254_020 Hb_000589_210--Hb_025254_020 Hb_000589_210--Hb_080147_060 Hb_001959_030 Hb_001959_030 Hb_000589_210--Hb_001959_030 Hb_001369_140--Hb_064122_010 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_001369_140--Hb_002597_010 Hb_118707_020 Hb_118707_020 Hb_000380_210--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_008727_030 Hb_008727_030 Hb_000380_210--Hb_008727_030 Hb_000380_210--Hb_018133_110 Hb_000380_210--Hb_000032_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.765365 0.854765 1.00398 4.68093 0.0087462 0.04087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318393 0.551157 0.348894 9.31109 0.318174

CAGE analysis