Hb_007545_200

Information

Type -
Description -
Location Contig7545: 139453-141230
Sequence    

Annotation

kegg
ID rcu:RCOM_1320860
description Pectinesterase-3 precursor, putative (EC:3.1.1.11)
nr
ID XP_002525673.1
description Pectinesterase-3 precursor, putative [Ricinus communis]
swissprot
ID Q8GX86
description Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2
trembl
ID B9SI54
description Pectinesterase-3, putative OS=Ricinus communis GN=RCOM_1320860 PE=3 SV=1
Gene Ontology
ID GO:0044464
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_200 0.0 - - Pectinesterase-3 precursor, putative [Ricinus communis]
2 Hb_000343_170 0.1463902288 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
3 Hb_119600_020 0.1475996129 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_052802_010 0.1603031424 - - kinase, putative [Ricinus communis]
5 Hb_003906_030 0.1955140837 - - mads box protein, putative [Ricinus communis]
6 Hb_020805_160 0.196006521 - - -
7 Hb_001810_050 0.1988053637 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026620_010 0.2039172685 - - -
9 Hb_000172_150 0.2079274524 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
10 Hb_097783_010 0.2109188171 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
11 Hb_076233_010 0.2132178192 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004204_040 0.2249032572 - - -
13 Hb_002820_130 0.2252169171 - - -
14 Hb_048944_020 0.2341686612 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
15 Hb_045786_010 0.2342820656 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_071079_060 0.2343505686 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
17 Hb_012640_010 0.2377524911 - - -
18 Hb_009851_040 0.2405225041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002965_180 0.2425463348 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
20 Hb_000174_020 0.243712089 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]

Gene co-expression network

sample Hb_007545_200 Hb_007545_200 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_119600_020 Hb_119600_020 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_000343_170--Hb_012640_010 Hb_097783_010 Hb_097783_010 Hb_000343_170--Hb_097783_010 Hb_000343_170--Hb_001810_050 Hb_000172_260 Hb_000172_260 Hb_000343_170--Hb_000172_260 Hb_045786_010 Hb_045786_010 Hb_000343_170--Hb_045786_010 Hb_026620_010 Hb_026620_010 Hb_119600_020--Hb_026620_010 Hb_119600_020--Hb_020805_160 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_119600_020--Hb_052802_010 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_052802_010--Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_052802_010--Hb_004204_040 Hb_052802_010--Hb_012640_010 Hb_071079_060 Hb_071079_060 Hb_052802_010--Hb_071079_060 Hb_000960_020 Hb_000960_020 Hb_003906_030--Hb_000960_020 Hb_091336_010 Hb_091336_010 Hb_003906_030--Hb_091336_010 Hb_003925_130 Hb_003925_130 Hb_003906_030--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_003906_030--Hb_000304_040 Hb_003906_030--Hb_020805_160 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_020805_160--Hb_071079_060 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_001810_050--Hb_004204_040 Hb_001810_050--Hb_012640_010 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_006052_080 Hb_006052_080 Hb_001810_050--Hb_006052_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359541 0.0793683 0.00939269 0.248688 0 0.0117837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00855208 0

CAGE analysis