Hb_007545_210

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig7545: 143535-146433
Sequence    

Annotation

kegg
ID rcu:RCOM_1320870
description hypothetical protein
nr
ID XP_012070363.1
description PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID A0A067KTT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02656 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_210 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
2 Hb_002388_060 0.0917753055 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000270_400 0.0995541376 - - lipase, putative [Ricinus communis]
4 Hb_000523_020 0.1012618798 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
5 Hb_000416_100 0.1161551253 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
6 Hb_002627_060 0.1363769789 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
7 Hb_000376_150 0.1388960663 - - O-acyltransferase WSD1 [Gossypium arboreum]
8 Hb_126669_010 0.1412054424 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
9 Hb_004738_090 0.1414116 - - conserved hypothetical protein [Ricinus communis]
10 Hb_170116_010 0.1415436309 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
11 Hb_002960_120 0.1422333489 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
12 Hb_003636_090 0.1423642808 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
13 Hb_004254_040 0.1476807752 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
14 Hb_098315_100 0.1492508872 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_032264_130 0.1527776746 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
16 Hb_001454_390 0.1553150892 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
17 Hb_002078_430 0.1560492113 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_000186_100 0.1563687133 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
19 Hb_000365_350 0.1572025939 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_000603_200 0.1578209075 - - PREDICTED: myosin-15 [Jatropha curcas]

Gene co-expression network

sample Hb_007545_210 Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_007545_210--Hb_002388_060 Hb_000270_400 Hb_000270_400 Hb_007545_210--Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_007545_210--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_007545_210--Hb_000416_100 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_002388_060--Hb_000523_020 Hb_002388_060--Hb_000416_100 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_000270_400--Hb_000523_020 Hb_126669_010 Hb_126669_010 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_000523_020--Hb_126669_010 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_000523_020--Hb_002627_060 Hb_001825_010 Hb_001825_010 Hb_000416_100--Hb_001825_010 Hb_000714_020 Hb_000714_020 Hb_000416_100--Hb_000714_020 Hb_004738_090 Hb_004738_090 Hb_000416_100--Hb_004738_090 Hb_000365_350 Hb_000365_350 Hb_000416_100--Hb_000365_350 Hb_002627_060--Hb_000172_610 Hb_002627_060--Hb_126669_010 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100 Hb_000376_150--Hb_098315_100 Hb_002506_110 Hb_002506_110 Hb_000376_150--Hb_002506_110 Hb_003304_080 Hb_003304_080 Hb_000376_150--Hb_003304_080 Hb_000376_150--Hb_002627_060 Hb_000376_150--Hb_000172_610 Hb_000050_120 Hb_000050_120 Hb_000376_150--Hb_000050_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.907 0.765638 0.936891 1.2506 12.9473 17.2592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63743 4.66961 7.87412 1.28714 0

CAGE analysis