Hb_007547_010

Information

Type -
Description -
Location Contig7547: 2740-6982
Sequence    

Annotation

kegg
ID rcu:RCOM_1374830
description Diphthamide biosynthesis protein, putative
nr
ID XP_012074066.1
description PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
swissprot
ID Q54PW5
description Diphthamide biosynthesis protein 1 OS=Dictyostelium discoideum GN=dph1 PE=3 SV=1
trembl
ID A0A067KJJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08675 PE=4 SV=1
Gene Ontology
ID GO:0005737
description diphthamide biosynthesis protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57005: 5517-6806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007547_010 0.0 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
2 Hb_003609_040 0.0570261694 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
3 Hb_000030_010 0.0664890289 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
4 Hb_002182_040 0.0800798283 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_014720_160 0.0825799966 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000001_020 0.0829884805 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
7 Hb_003297_030 0.0850751773 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
8 Hb_000943_070 0.085960561 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
9 Hb_000392_300 0.0901154585 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
10 Hb_005928_060 0.0907127166 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
11 Hb_010795_010 0.0929981723 - - protein with unknown function [Ricinus communis]
12 Hb_006065_020 0.0938766662 - - -
13 Hb_005237_010 0.0941698064 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
14 Hb_000155_190 0.0957758289 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000000_080 0.09617055 - - lipoate-protein ligase B, putative [Ricinus communis]
16 Hb_000340_510 0.0962168294 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_000172_370 0.0972504697 - - -
18 Hb_168918_020 0.0974408408 - - pectin acetylesterase, putative [Ricinus communis]
19 Hb_005527_050 0.098682544 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
20 Hb_000085_060 0.0992193349 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]

Gene co-expression network

sample Hb_007547_010 Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_007547_010--Hb_003609_040 Hb_000030_010 Hb_000030_010 Hb_007547_010--Hb_000030_010 Hb_002182_040 Hb_002182_040 Hb_007547_010--Hb_002182_040 Hb_014720_160 Hb_014720_160 Hb_007547_010--Hb_014720_160 Hb_000001_020 Hb_000001_020 Hb_007547_010--Hb_000001_020 Hb_003297_030 Hb_003297_030 Hb_007547_010--Hb_003297_030 Hb_003609_040--Hb_000001_020 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003609_040--Hb_003297_030 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_002182_040--Hb_003609_040 Hb_002182_040--Hb_000030_010 Hb_000761_020 Hb_000761_020 Hb_002182_040--Hb_000761_020 Hb_002182_040--Hb_014720_160 Hb_005662_030 Hb_005662_030 Hb_002182_040--Hb_005662_030 Hb_000922_330 Hb_000922_330 Hb_014720_160--Hb_000922_330 Hb_000085_060 Hb_000085_060 Hb_014720_160--Hb_000085_060 Hb_014720_160--Hb_003609_040 Hb_014720_160--Hb_000001_020 Hb_014720_160--Hb_005662_030 Hb_000025_200 Hb_000025_200 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000001_020--Hb_000761_020 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_003297_030--Hb_000030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1302 6.73344 4.91523 5.55869 25.8193 17.4386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2723 16.3042 17.3739 4.47129 7.31383

CAGE analysis