Hb_007547_040

Information

Type -
Description -
Location Contig7547: 11277-12464
Sequence    

Annotation

kegg
ID pda:103698528
description auxin response factor 23-like
nr
ID EMT27061.1
description Auxin response factor 9 [Aegilops tauschii]
swissprot
ID Q0JCZ4
description Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1
trembl
ID M8CTG9
description Auxin response factor OS=Aegilops tauschii GN=F775_27540 PE=3 SV=1
Gene Ontology
ID GO:0016458
description auxin response factor 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57006: 11681-12693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007547_040 0.0 - - Auxin response factor 9 [Aegilops tauschii]
2 Hb_105427_010 0.1856649517 - - -
3 Hb_104812_030 0.2087387927 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
4 Hb_002450_110 0.2296933442 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
5 Hb_000099_220 0.2339915041 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_007765_060 0.2382896768 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_000544_040 0.2439962798 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
8 Hb_002903_120 0.2550682463 - - -
9 Hb_000815_100 0.2635574302 - - -
10 Hb_184770_010 0.2653392647 - - -
11 Hb_006831_100 0.2659207429 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
12 Hb_130177_010 0.2669977275 - - hypothetical protein RCOM_0897890 [Ricinus communis]
13 Hb_001916_130 0.2708568067 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
14 Hb_019936_010 0.2712687864 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
15 Hb_000735_010 0.2745761394 - - -
16 Hb_000832_200 0.2766322768 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
17 Hb_002897_040 0.2766800291 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
18 Hb_031862_170 0.2805094772 - - immunophilin, putative [Ricinus communis]
19 Hb_000300_540 0.281246376 - - PREDICTED: syntaxin-132 [Jatropha curcas]
20 Hb_085226_010 0.2825862813 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]

Gene co-expression network

sample Hb_007547_040 Hb_007547_040 Hb_105427_010 Hb_105427_010 Hb_007547_040--Hb_105427_010 Hb_104812_030 Hb_104812_030 Hb_007547_040--Hb_104812_030 Hb_002450_110 Hb_002450_110 Hb_007547_040--Hb_002450_110 Hb_000099_220 Hb_000099_220 Hb_007547_040--Hb_000099_220 Hb_007765_060 Hb_007765_060 Hb_007547_040--Hb_007765_060 Hb_000544_040 Hb_000544_040 Hb_007547_040--Hb_000544_040 Hb_050686_010 Hb_050686_010 Hb_105427_010--Hb_050686_010 Hb_001097_060 Hb_001097_060 Hb_105427_010--Hb_001097_060 Hb_002267_090 Hb_002267_090 Hb_105427_010--Hb_002267_090 Hb_005928_080 Hb_005928_080 Hb_105427_010--Hb_005928_080 Hb_001916_130 Hb_001916_130 Hb_105427_010--Hb_001916_130 Hb_023610_010 Hb_023610_010 Hb_104812_030--Hb_023610_010 Hb_130177_010 Hb_130177_010 Hb_104812_030--Hb_130177_010 Hb_000815_100 Hb_000815_100 Hb_104812_030--Hb_000815_100 Hb_006029_020 Hb_006029_020 Hb_104812_030--Hb_006029_020 Hb_005657_010 Hb_005657_010 Hb_104812_030--Hb_005657_010 Hb_002450_110--Hb_000544_040 Hb_002450_110--Hb_000099_220 Hb_002450_110--Hb_001916_130 Hb_095471_010 Hb_095471_010 Hb_002450_110--Hb_095471_010 Hb_000313_320 Hb_000313_320 Hb_002450_110--Hb_000313_320 Hb_003768_040 Hb_003768_040 Hb_000099_220--Hb_003768_040 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_000590_030 Hb_000590_030 Hb_000099_220--Hb_000590_030 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_000099_220--Hb_104812_030 Hb_000740_070 Hb_000740_070 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_001956_050 Hb_001956_050 Hb_007765_060--Hb_001956_050 Hb_007765_060--Hb_000544_040 Hb_004117_030 Hb_004117_030 Hb_007765_060--Hb_004117_030 Hb_000849_150 Hb_000849_150 Hb_000544_040--Hb_000849_150 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16589 0.165702 1.5481 0.699613 5.19965 1.02972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202188 0.476446 2.02864 0.0681506 0

CAGE analysis