Hb_007547_050

Information

Type -
Description -
Location Contig7547: 26527-27486
Sequence    

Annotation

kegg
ID pda:103698528
description auxin response factor 23-like
nr
ID EMT27061.1
description Auxin response factor 9 [Aegilops tauschii]
swissprot
ID Q0JCZ4
description Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1
trembl
ID A0A0D9VH38
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0010033
description auxin response factor 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007547_050 0.0 - - Auxin response factor 9 [Aegilops tauschii]
2 Hb_105427_010 0.2044828703 - - -
3 Hb_045370_010 0.214602112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_050686_010 0.2484375174 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004097_020 0.2538443062 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001329_260 0.2647945402 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
7 Hb_006483_010 0.2663439111 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_002267_090 0.2707644696 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
9 Hb_003320_030 0.2717983839 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005928_080 0.2740681451 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
11 Hb_005054_050 0.274956022 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_002903_120 0.2775097148 - - -
13 Hb_003177_010 0.28046196 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
14 Hb_000318_260 0.2809356298 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
15 Hb_000088_030 0.2831259644 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
16 Hb_120662_010 0.2845655003 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
17 Hb_099698_010 0.2851409128 - - -
18 Hb_140595_010 0.2857338906 - - -
19 Hb_003125_140 0.288763383 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
20 Hb_008406_130 0.2917159715 - - -

Gene co-expression network

sample Hb_007547_050 Hb_007547_050 Hb_105427_010 Hb_105427_010 Hb_007547_050--Hb_105427_010 Hb_045370_010 Hb_045370_010 Hb_007547_050--Hb_045370_010 Hb_050686_010 Hb_050686_010 Hb_007547_050--Hb_050686_010 Hb_004097_020 Hb_004097_020 Hb_007547_050--Hb_004097_020 Hb_001329_260 Hb_001329_260 Hb_007547_050--Hb_001329_260 Hb_006483_010 Hb_006483_010 Hb_007547_050--Hb_006483_010 Hb_007547_040 Hb_007547_040 Hb_105427_010--Hb_007547_040 Hb_105427_010--Hb_050686_010 Hb_001097_060 Hb_001097_060 Hb_105427_010--Hb_001097_060 Hb_002267_090 Hb_002267_090 Hb_105427_010--Hb_002267_090 Hb_005928_080 Hb_005928_080 Hb_105427_010--Hb_005928_080 Hb_001916_130 Hb_001916_130 Hb_105427_010--Hb_001916_130 Hb_003125_140 Hb_003125_140 Hb_045370_010--Hb_003125_140 Hb_045370_010--Hb_004097_020 Hb_002483_020 Hb_002483_020 Hb_045370_010--Hb_002483_020 Hb_140595_010 Hb_140595_010 Hb_045370_010--Hb_140595_010 Hb_005608_010 Hb_005608_010 Hb_045370_010--Hb_005608_010 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_050686_010--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_050686_010--Hb_000366_190 Hb_000040_050 Hb_000040_050 Hb_050686_010--Hb_000040_050 Hb_120662_010 Hb_120662_010 Hb_050686_010--Hb_120662_010 Hb_000329_420 Hb_000329_420 Hb_050686_010--Hb_000329_420 Hb_000140_150 Hb_000140_150 Hb_004097_020--Hb_000140_150 Hb_002918_310 Hb_002918_310 Hb_004097_020--Hb_002918_310 Hb_001946_360 Hb_001946_360 Hb_004097_020--Hb_001946_360 Hb_006631_010 Hb_006631_010 Hb_004097_020--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_004097_020--Hb_000173_210 Hb_000619_070 Hb_000619_070 Hb_004097_020--Hb_000619_070 Hb_003320_030 Hb_003320_030 Hb_001329_260--Hb_003320_030 Hb_004650_080 Hb_004650_080 Hb_001329_260--Hb_004650_080 Hb_001196_050 Hb_001196_050 Hb_001329_260--Hb_001196_050 Hb_000857_050 Hb_000857_050 Hb_001329_260--Hb_000857_050 Hb_098315_110 Hb_098315_110 Hb_001329_260--Hb_098315_110 Hb_000331_610 Hb_000331_610 Hb_001329_260--Hb_000331_610 Hb_000749_110 Hb_000749_110 Hb_006483_010--Hb_000749_110 Hb_006483_010--Hb_000366_190 Hb_015026_060 Hb_015026_060 Hb_006483_010--Hb_015026_060 Hb_000261_520 Hb_000261_520 Hb_006483_010--Hb_000261_520 Hb_005271_080 Hb_005271_080 Hb_006483_010--Hb_005271_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93025 0.598728 0.89846 4.27008 14.7683 2.01753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.724167 1.42563 0.408257 0.26416 0

CAGE analysis