Hb_007558_020

Information

Type -
Description -
Location Contig7558: 7696-10140
Sequence    

Annotation

kegg
ID tcc:TCM_034779
description S-locus lectin protein kinase family protein, putative
nr
ID KDP26473.1
description hypothetical protein JCGZ_17631 [Jatropha curcas]
swissprot
ID Q9XID3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=2 SV=1
trembl
ID A0A067JUI0
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_17631 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57026: 7580-10295
cDNA
(Sanger)
(ID:Location)		 029_D11.ab1: 9676-10286 , 034_C06.ab1: 9515-10286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_020 0.0 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
2 Hb_000394_110 0.1789306897 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_001771_080 0.1866420644 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
4 Hb_000343_180 0.1954919925 - - NDWp3 [Podospora anserina]
5 Hb_002849_140 0.2033951717 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
6 Hb_006907_080 0.2042281158 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
7 Hb_140049_010 0.2083271401 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
8 Hb_001199_040 0.2108530927 - - unnamed protein product [Coffea canephora]
9 Hb_104764_010 0.212596902 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
10 Hb_098533_020 0.2156984427 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
11 Hb_002110_240 0.2232143911 - - clathrin assembly protein, putative [Ricinus communis]
12 Hb_002035_110 0.225967051 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
13 Hb_000057_140 0.2269242477 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
14 Hb_000948_080 0.2275740499 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
15 Hb_009974_020 0.2278954154 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
16 Hb_000510_230 0.2299903745 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
17 Hb_000802_110 0.2329166895 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
18 Hb_002341_020 0.2423469489 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
19 Hb_000475_040 0.2447925602 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_004787_040 0.2481306167 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007558_020 Hb_007558_020 Hb_000394_110 Hb_000394_110 Hb_007558_020--Hb_000394_110 Hb_001771_080 Hb_001771_080 Hb_007558_020--Hb_001771_080 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_006907_080 Hb_006907_080 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_104764_010 Hb_104764_010 Hb_001771_080--Hb_104764_010 Hb_001771_080--Hb_098533_020 Hb_006907_100 Hb_006907_100 Hb_001771_080--Hb_006907_100 Hb_062038_010 Hb_062038_010 Hb_001771_080--Hb_062038_010 Hb_001771_080--Hb_000394_110 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_128524_020 Hb_128524_020 Hb_002849_140--Hb_128524_020 Hb_000538_030 Hb_000538_030 Hb_002849_140--Hb_000538_030 Hb_001123_200 Hb_001123_200 Hb_002849_140--Hb_001123_200 Hb_004965_050 Hb_004965_050 Hb_002849_140--Hb_004965_050 Hb_006909_060 Hb_006909_060 Hb_002849_140--Hb_006909_060 Hb_002849_140--Hb_000394_110 Hb_006907_080--Hb_140049_010 Hb_000120_150 Hb_000120_150 Hb_006907_080--Hb_000120_150 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_006907_080--Hb_104764_010 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110 Hb_010506_010 Hb_010506_010 Hb_140049_010--Hb_010506_010 Hb_140049_010--Hb_000418_080 Hb_140049_010--Hb_000120_150 Hb_004787_040 Hb_004787_040 Hb_140049_010--Hb_004787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401784 3.44718 2.27839 1.21922 0.0468604 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28069 3.71745 1.70982 1.0635 0

CAGE analysis