Hb_007558_140

Information

Type -
Description -
Location Contig7558: 87196-97527
Sequence    

Annotation

kegg
ID rcu:RCOM_1058020
description phospholipid-transporting atpase, putative (EC:3.6.3.1)
nr
ID XP_012091040.1
description PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
swissprot
ID P98204
description Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=2 SV=1
trembl
ID A0A067JQP3
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_00646 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57042: 87291-87526 , PASA_asmbl_57043: 87633-88449 , PASA_asmbl_57044: 88459-97593 , PASA_asmbl_57045: 94692-95079
cDNA
(Sanger)
(ID:Location)		 022_D09.ab1: 87291-87526

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_140 0.0 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
2 Hb_011918_080 0.0506190922 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
3 Hb_002477_160 0.0625965719 - - hypothetical protein L484_013453 [Morus notabilis]
4 Hb_002307_100 0.0673767378 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
5 Hb_001085_170 0.0740163317 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
6 Hb_153258_010 0.0784111156 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
7 Hb_000997_210 0.0822227234 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
8 Hb_007943_080 0.0855036852 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
9 Hb_002027_130 0.0872837809 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
10 Hb_000179_210 0.0902678689 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
11 Hb_000120_950 0.0917590709 - - PREDICTED: protein GRIP [Jatropha curcas]
12 Hb_182026_020 0.0918300601 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
13 Hb_098993_010 0.0919089925 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
14 Hb_000120_050 0.0920926962 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
15 Hb_175338_030 0.0926069612 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
16 Hb_003297_030 0.0937221406 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
17 Hb_000436_070 0.0955442519 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
18 Hb_004046_010 0.0958044199 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
19 Hb_001635_100 0.0964288126 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
20 Hb_010175_020 0.0971691118 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007558_140 Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210 Hb_011918_080--Hb_002477_160 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_002307_100--Hb_175338_030 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_002006_090 Hb_002006_090 Hb_001085_170--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001085_170--Hb_000614_230 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210 Hb_000041_150 Hb_000041_150 Hb_153258_010--Hb_000041_150 Hb_000120_050 Hb_000120_050 Hb_153258_010--Hb_000120_050 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9124 13.8425 5.3035 12.4818 39.0412 33.3581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6904 18.7354 48.7009 11.97 8.7009

CAGE analysis