Hb_007574_060

Information

Type transcription factor
Description TF Family: LOB
Location Contig7574: 52600-53265
Sequence    

Annotation

kegg
ID rcu:RCOM_0797320
description LOB domain-containing protein, putative
nr
ID XP_012077559.1
description PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
swissprot
ID Q9LRW1
description LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1
trembl
ID A0A067KGF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007574_060 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
2 Hb_163413_010 0.1809114424 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
3 Hb_000048_100 0.1863900124 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001405_130 0.2011908588 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
5 Hb_000832_240 0.2066696288 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008442_010 0.2077041275 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
7 Hb_000348_040 0.2240668528 - - -
8 Hb_000367_170 0.2277366558 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
9 Hb_004586_450 0.2391677932 - - -
10 Hb_005199_010 0.2405080742 - - conserved hypothetical protein [Ricinus communis]
11 Hb_056768_010 0.2407158346 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
12 Hb_030765_010 0.2425894038 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
13 Hb_015401_010 0.2465615371 - - hypothetical protein VITISV_001548 [Vitis vinifera]
14 Hb_171529_010 0.2481469491 - - -
15 Hb_003023_040 0.249646193 - - -
16 Hb_012532_030 0.2576349141 - - -
17 Hb_000048_090 0.2578058057 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
18 Hb_021888_110 0.2586509829 - - -
19 Hb_029888_020 0.2601620391 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
20 Hb_121550_010 0.2606209907 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007574_060 Hb_007574_060 Hb_163413_010 Hb_163413_010 Hb_007574_060--Hb_163413_010 Hb_000048_100 Hb_000048_100 Hb_007574_060--Hb_000048_100 Hb_001405_130 Hb_001405_130 Hb_007574_060--Hb_001405_130 Hb_000832_240 Hb_000832_240 Hb_007574_060--Hb_000832_240 Hb_008442_010 Hb_008442_010 Hb_007574_060--Hb_008442_010 Hb_000348_040 Hb_000348_040 Hb_007574_060--Hb_000348_040 Hb_036285_010 Hb_036285_010 Hb_163413_010--Hb_036285_010 Hb_021888_110 Hb_021888_110 Hb_163413_010--Hb_021888_110 Hb_163413_010--Hb_000832_240 Hb_000367_170 Hb_000367_170 Hb_163413_010--Hb_000367_170 Hb_001981_080 Hb_001981_080 Hb_163413_010--Hb_001981_080 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010 Hb_000048_100--Hb_000348_040 Hb_001405_130--Hb_000562_080 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_001405_130--Hb_008442_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060 Hb_008442_010--Hb_013492_010 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_000348_040--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.547009 0.139666 0.241512 0.171442 0.105653 3.20886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47509 3.13755 0 0.0278155 0

CAGE analysis