Hb_007575_040

Information

Type transcription factor
Description TF Family: bZIP
Location Contig7575: 69828-73161
Sequence    

Annotation

kegg
ID rcu:RCOM_1596670
description DNA binding protein, putative
nr
ID XP_012073848.1
description PREDICTED: transcription factor VIP1-like [Jatropha curcas]
swissprot
ID Q9MA75
description Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
trembl
ID A0A067KLE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08248 PE=4 SV=1
Gene Ontology
ID GO:0003700
description dentin sialophospho

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57086: 69970-70261 , PASA_asmbl_57088: 72743-72860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_040 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
2 Hb_010638_020 0.0773430329 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
3 Hb_098993_010 0.0832289088 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
4 Hb_000186_240 0.0903572765 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
5 Hb_010863_080 0.0970731553 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
6 Hb_003297_030 0.0996632224 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
7 Hb_000352_110 0.1000026471 - - DNA topoisomerase II, putative [Ricinus communis]
8 Hb_008085_030 0.1009965178 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
9 Hb_007426_230 0.1014320694 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
10 Hb_000421_260 0.1031169817 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
11 Hb_000179_210 0.10441967 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
12 Hb_085781_010 0.1052864711 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
13 Hb_011918_080 0.1060436971 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
14 Hb_000997_210 0.1067741153 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
15 Hb_000417_180 0.1070463669 - - 60S ribosomal protein L11, putative [Ricinus communis]
16 Hb_012340_010 0.1096361233 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
17 Hb_004108_050 0.1108029993 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
18 Hb_000576_030 0.1108150426 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
19 Hb_004600_040 0.1110709519 - - -
20 Hb_000297_050 0.1121210171 - - hypothetical protein JCGZ_08840 [Jatropha curcas]

Gene co-expression network

sample Hb_007575_040 Hb_007575_040 Hb_010638_020 Hb_010638_020 Hb_007575_040--Hb_010638_020 Hb_098993_010 Hb_098993_010 Hb_007575_040--Hb_098993_010 Hb_000186_240 Hb_000186_240 Hb_007575_040--Hb_000186_240 Hb_010863_080 Hb_010863_080 Hb_007575_040--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_007575_040--Hb_003297_030 Hb_000352_110 Hb_000352_110 Hb_007575_040--Hb_000352_110 Hb_182026_020 Hb_182026_020 Hb_010638_020--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_010638_020--Hb_001439_120 Hb_010638_020--Hb_000186_240 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_000556_080 Hb_000556_080 Hb_010638_020--Hb_000556_080 Hb_098993_010--Hb_003297_030 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_000200_340 Hb_000200_340 Hb_000186_240--Hb_000200_340 Hb_000592_050 Hb_000592_050 Hb_000186_240--Hb_000592_050 Hb_000179_210 Hb_000179_210 Hb_000186_240--Hb_000179_210 Hb_000110_160 Hb_000110_160 Hb_000186_240--Hb_000110_160 Hb_000186_240--Hb_010863_080 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_002973_080 Hb_002973_080 Hb_000352_110--Hb_002973_080 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000330_050 Hb_000330_050 Hb_000352_110--Hb_000330_050 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_000352_110--Hb_010638_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.81564 2.20833 2.40094 1.94789 13.1452 8.98321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54625 10.1842 14.3943 4.66886 2.91978

CAGE analysis