Hb_007575_070

Information

Type -
Description -
Location Contig7575: 86496-87625
Sequence    

Annotation

kegg
ID dosa:Os02t0457300-00
description Os02g0457300; Similar to Histone H3.
nr
ID KHN41576.1
description Histone H3.2 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0E0L7C3
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57098: 86408-87647 , PASA_asmbl_57099: 86536-86830
cDNA
(Sanger)
(ID:Location)		 021_C10.ab1: 86450-87520 , 049_J22.ab1: 86450-87534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_070 0.0 - - Histone H3.2 [Glycine soja]
2 Hb_001634_040 0.0601603784 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
3 Hb_000805_130 0.0667534646 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007944_040 0.0669175802 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
5 Hb_002588_010 0.0816841223 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000062_390 0.0817016372 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
7 Hb_001045_080 0.0819753226 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
8 Hb_000365_080 0.0842187317 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
9 Hb_000563_240 0.086117313 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
10 Hb_005590_020 0.0866375774 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
11 Hb_000028_400 0.0866863963 - - Protein SSU72, putative [Ricinus communis]
12 Hb_000905_180 0.0907301953 - - 60S ribosomal protein L31A [Hevea brasiliensis]
13 Hb_001268_140 0.0909775623 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007304_070 0.0920204227 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
15 Hb_000111_340 0.0922086343 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
16 Hb_076626_010 0.092295635 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011311_010 0.0938279102 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_026398_010 0.0941198494 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
19 Hb_001300_270 0.0959310527 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
20 Hb_007416_020 0.0964270177 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]

Gene co-expression network

sample Hb_007575_070 Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_007575_070--Hb_001634_040 Hb_000805_130 Hb_000805_130 Hb_007575_070--Hb_000805_130 Hb_007944_040 Hb_007944_040 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_007575_070--Hb_000062_390 Hb_001045_080 Hb_001045_080 Hb_007575_070--Hb_001045_080 Hb_001634_040--Hb_000062_390 Hb_001634_040--Hb_000805_130 Hb_000181_300 Hb_000181_300 Hb_001634_040--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_001634_040--Hb_000012_100 Hb_000193_120 Hb_000193_120 Hb_001634_040--Hb_000193_120 Hb_000172_420 Hb_000172_420 Hb_000805_130--Hb_000172_420 Hb_000805_130--Hb_000062_390 Hb_008948_050 Hb_008948_050 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_002588_010--Hb_000111_340 Hb_000062_390--Hb_002588_010 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.815 57.2955 76.6459 62.3746 76.3332 126.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
365.572 600.804 218.38 67.7536 52.7366

CAGE analysis