Hb_007575_080

Information

Type -
Description -
Location Contig7575: 116968-127665
Sequence    

Annotation

kegg
ID rcu:RCOM_1596610
description lysine-specific histone demethylase, putative (EC:1.4.3.2)
nr
ID XP_012071981.1
description PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
swissprot
ID F4JLS1
description Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1
trembl
ID A0A067L282
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04520 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific histone demethylase 1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57101: 118524-118741 , PASA_asmbl_57102: 118788-120590 , PASA_asmbl_57103: 121901-127611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_080 0.0 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
2 Hb_008053_040 0.0593771983 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
3 Hb_024185_010 0.0614541461 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
4 Hb_006117_080 0.0719360091 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_000321_150 0.0748534338 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
6 Hb_000661_130 0.086956999 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
7 Hb_002780_010 0.0903939926 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
8 Hb_010180_060 0.0909671877 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
9 Hb_005486_030 0.0928814945 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
10 Hb_000174_290 0.0931126277 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
11 Hb_000720_150 0.0940401868 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
12 Hb_002521_020 0.0949376172 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
13 Hb_000069_470 0.0951452244 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
14 Hb_014834_060 0.0957989283 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_011242_060 0.0961788213 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
16 Hb_001821_130 0.0963158899 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_000260_070 0.0976656331 - - kinase, putative [Ricinus communis]
18 Hb_001104_190 0.0980088417 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
19 Hb_019430_020 0.0982270315 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
20 Hb_000261_150 0.0985750285 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007575_080 Hb_007575_080 Hb_008053_040 Hb_008053_040 Hb_007575_080--Hb_008053_040 Hb_024185_010 Hb_024185_010 Hb_007575_080--Hb_024185_010 Hb_006117_080 Hb_006117_080 Hb_007575_080--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_007575_080--Hb_000321_150 Hb_000661_130 Hb_000661_130 Hb_007575_080--Hb_000661_130 Hb_002780_010 Hb_002780_010 Hb_007575_080--Hb_002780_010 Hb_003805_040 Hb_003805_040 Hb_008053_040--Hb_003805_040 Hb_005186_040 Hb_005186_040 Hb_008053_040--Hb_005186_040 Hb_002521_020 Hb_002521_020 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_008053_040--Hb_024185_010 Hb_000720_150 Hb_000720_150 Hb_024185_010--Hb_000720_150 Hb_024185_010--Hb_006117_080 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_002007_160 Hb_002007_160 Hb_002780_010--Hb_002007_160 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_001268_380 Hb_001268_380 Hb_002780_010--Hb_001268_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58137 10.1787 1.99059 3.37886 4.26538 4.23232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14938 2.18364 3.86345 3.18453 6.52493

CAGE analysis