Hb_007576_060

Information

Type -
Description -
Location Contig7576: 43291-51925
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57108: 41998-63495 , PASA_asmbl_57109: 41998-63495 , PASA_asmbl_57110: 41998-63495 , PASA_asmbl_57111: 41998-63495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_060 0.0 - - -
2 Hb_005228_040 0.1430616494 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
3 Hb_000417_170 0.1587896694 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
4 Hb_000984_210 0.1608041964 - - PREDICTED: uncharacterized protein LOC104451821 [Eucalyptus grandis]
5 Hb_003642_010 0.1849907962 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_001033_070 0.1857170262 - - seryl-tRNA synthetase, putative [Ricinus communis]
7 Hb_009252_010 0.1893365492 - - PREDICTED: kinesin light chain [Jatropha curcas]
8 Hb_004109_160 0.1976210575 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
9 Hb_000189_440 0.1978558094 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
10 Hb_183963_010 0.1978840537 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
11 Hb_000445_150 0.1980125201 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
12 Hb_004097_090 0.2001605346 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
13 Hb_020378_060 0.2013746688 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
14 Hb_000086_390 0.2021362893 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
15 Hb_000096_190 0.2044589508 - - unknown [Lotus japonicus]
16 Hb_002596_080 0.2056623462 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
17 Hb_000834_080 0.208395913 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
18 Hb_000300_020 0.2088470671 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
19 Hb_000473_060 0.209584774 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
20 Hb_000056_090 0.2100916811 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_007576_060 Hb_007576_060 Hb_005228_040 Hb_005228_040 Hb_007576_060--Hb_005228_040 Hb_000417_170 Hb_000417_170 Hb_007576_060--Hb_000417_170 Hb_000984_210 Hb_000984_210 Hb_007576_060--Hb_000984_210 Hb_003642_010 Hb_003642_010 Hb_007576_060--Hb_003642_010 Hb_001033_070 Hb_001033_070 Hb_007576_060--Hb_001033_070 Hb_009252_010 Hb_009252_010 Hb_007576_060--Hb_009252_010 Hb_005228_040--Hb_009252_010 Hb_001628_120 Hb_001628_120 Hb_005228_040--Hb_001628_120 Hb_183963_010 Hb_183963_010 Hb_005228_040--Hb_183963_010 Hb_005228_040--Hb_000984_210 Hb_003226_250 Hb_003226_250 Hb_005228_040--Hb_003226_250 Hb_000834_080 Hb_000834_080 Hb_005228_040--Hb_000834_080 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_000417_170--Hb_009252_010 Hb_003746_010 Hb_003746_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_005348_110 Hb_005348_110 Hb_000417_170--Hb_005348_110 Hb_002305_010 Hb_002305_010 Hb_000984_210--Hb_002305_010 Hb_000984_210--Hb_003226_250 Hb_003728_090 Hb_003728_090 Hb_000984_210--Hb_003728_090 Hb_000984_210--Hb_183963_010 Hb_011310_040 Hb_011310_040 Hb_000984_210--Hb_011310_040 Hb_016219_030 Hb_016219_030 Hb_003642_010--Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_003642_010--Hb_000189_450 Hb_004631_090 Hb_004631_090 Hb_003642_010--Hb_004631_090 Hb_000328_050 Hb_000328_050 Hb_003642_010--Hb_000328_050 Hb_002955_020 Hb_002955_020 Hb_003642_010--Hb_002955_020 Hb_000107_590 Hb_000107_590 Hb_003642_010--Hb_000107_590 Hb_000381_010 Hb_000381_010 Hb_001033_070--Hb_000381_010 Hb_001033_070--Hb_000417_170 Hb_000106_030 Hb_000106_030 Hb_001033_070--Hb_000106_030 Hb_000836_060 Hb_000836_060 Hb_001033_070--Hb_000836_060 Hb_002527_040 Hb_002527_040 Hb_001033_070--Hb_002527_040 Hb_009252_010--Hb_030959_010 Hb_009674_050 Hb_009674_050 Hb_009252_010--Hb_009674_050 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_009252_010--Hb_005348_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110005 0.161763 0.609438 0.0761658 0.172954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.093983 0.221609 0.130093 0.0604199 0.864194

CAGE analysis