Hb_007576_080

Information

Type -
Description -
Location Contig7576: 64068-66731
Sequence    

Annotation

kegg
ID gmx:100780521
description uncharacterized LOC100780521
nr
ID XP_012084604.1
description PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57114: 64064-66714
cDNA
(Sanger)
(ID:Location)		 031_L17.ab1: 64393-66687

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_080 0.0 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
2 Hb_014109_040 0.0616612737 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
3 Hb_003780_030 0.0617055841 - - PREDICTED: protein CMSS1 [Jatropha curcas]
4 Hb_000589_120 0.0630766375 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
5 Hb_007423_040 0.0696748558 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
6 Hb_002652_030 0.0748899091 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
7 Hb_002585_040 0.0753693829 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
8 Hb_002320_040 0.0759518344 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
9 Hb_002253_100 0.076372195 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
10 Hb_027472_040 0.0764558695 - - SKP1 [Hevea brasiliensis]
11 Hb_003935_020 0.0767764328 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000796_210 0.0779191326 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003428_030 0.0787916722 - - tRNA, putative [Ricinus communis]
14 Hb_033642_090 0.0801949514 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004837_240 0.0802820095 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
16 Hb_001635_180 0.0823818806 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
17 Hb_000959_210 0.083773115 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
18 Hb_000317_240 0.0838511195 - - PREDICTED: protein DYAD [Jatropha curcas]
19 Hb_003125_120 0.0840354732 - - PREDICTED: TITAN-like protein [Jatropha curcas]
20 Hb_000334_280 0.0847915256 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_080 Hb_007576_080 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_038172_010 Hb_038172_010 Hb_003780_030--Hb_038172_010 Hb_003525_010 Hb_003525_010 Hb_003780_030--Hb_003525_010 Hb_000317_240 Hb_000317_240 Hb_003780_030--Hb_000317_240 Hb_001481_090 Hb_001481_090 Hb_003780_030--Hb_001481_090 Hb_003780_030--Hb_014109_040 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_008554_060 Hb_008554_060 Hb_000589_120--Hb_008554_060 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_001089_110 Hb_001089_110 Hb_002652_030--Hb_001089_110 Hb_000696_230 Hb_000696_230 Hb_002652_030--Hb_000696_230 Hb_000959_210 Hb_000959_210 Hb_002652_030--Hb_000959_210 Hb_164544_010 Hb_164544_010 Hb_002652_030--Hb_164544_010 Hb_002175_030 Hb_002175_030 Hb_002652_030--Hb_002175_030 Hb_008453_140 Hb_008453_140 Hb_002652_030--Hb_008453_140 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4789 30.3405 32.7996 30.032 49.4483 34.5772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.556 59.6149 23.7769 44.5655 20.1342

CAGE analysis